SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93816

Length: 1542 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93816

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MEI2-like protein 4 [Arabidopsis thaliana] sp\|Q9LYN7.1\|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb\|CAB87285.1\| Mei2-like protein [Arabidopsis thaliana] dbj\|BAE99028.1\| Mei2-like protein [Arabidopsis thal	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	AML1	-	-	9.596e-26	-

Source	Gene names
Sma3	AML1; AT4G18120; AT4g18120; AT5G61960; At1g29400; At2g42890; At5g07290; At5g61960; CHLREDRAFT_152680; F15D2.30; F15J5.90; GSVIVT00003386001; GSVIVT00004514001; GSVIVT00006196001; GSVIVT00008158001; GSVIVT00012250001; GSVIVT00018040001; GSVIVT00018912001;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	positive regulation of meiosis	GO:0045836	Biological Process	-
Sma3	meristem development	GO:0048507	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA recognition motif 2	IPR007201	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G07290.1	AML4, ML4 MEI2-like 4 chr5:2294248-2298491 FORWARD LENGTH=907	66%
RefSeq	Arabidopsis thaliana	NP_196346.1	MEI2-like protein 4 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002297875.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKG9

Fln msg: your sequence is shorter than subject: 285 - 892

Fln protein: LLAHLELWDCVVHMECIHCNLVTHALMSQMSVNGVVDPTVSSPSLGAMSPQQRCLVFPNNGSPMSIHGSLENANERGRSRRIDNNANQVDNRKQYQLDIDRILCGEDTRTTLMIKNIPNKYTSKMLLAAIDEQFRGTYDFIYLPIDFKNKCNVGYSFINMIDPLHIVPFFQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPIIFHSEGPNVGDQEPFPVGVNVRTRPGKSRTNNSGSHQGSPSNSGNGDDCSNGMEPSIYSLEKDGE*

Protein Length: 286

Fln nts: CTCCTGGCTCACTTGGAGCTGTGGGATTGTGTGGTACACATGGAATGCATCCATTGCAATTTGGTCACTCACGCTCTTATGTCTCAGATGAGTGTCAATGGTGTTGTAGATCCCACTGTTTCTTCTCCAAGCTTGGGAGCAATGTCTCCACAGCAAAGATGCCTCGTCTTTCCTAACAATGGGTCACCAATGTCCATACATGGATCCTTAGAGAATGCTAATGAACGTGGAAGGAGCCGTAGAATTGACAACAATGCCAATCAAGTTGATAATAGGAAACAGTATCAACTTGACATTGACCGAATATTATGTGGAGAAGATACTCGGACAACACTTATGATTAAGAATATTCCTAACAAGTACACATCAAAGATGCTCTTGGCTGCTATAGATGAACAATTCCGTGGAACTTATGATTTCATTTACCTGCCTATTGACTTCAAGAATAAGTGTAATGTTGGCTACTCCTTTATCAATATGATCGATCCTTTACATATCGTACCATTCTTCCAGGCATTCAATGGTAAGAAATGGGAAAAGTTCAACAGTGAAAAGGTTGCTTCTCTTGCATATGCTCGAATTCAGGGTAAAGCTGCTCTCATTGCACACTTCCAGAATTCTAGCTTAATGAATGAAGACAAACGATGTCGCCCCATTATTTTTCATTCGGAGGGTCCAAATGTAGGTGATCAGGAGCCATTTCCTGTTGGAGTCAATGTGCGTACAAGACCTGGCAAAAGTCGTACTAATAATTCTGGAAGTCATCAAGGTAGTCCTTCAAACAGTGGAAACGGGGATGACTGCAGTAATGGCATGGAGCCTTCCATTTATTCTCTTGAAAAGGATGGGGAATGA___AAAAAATTTCTACTTTATCTGGCTATGATTTGAAGCTGATACCTAGTTCCTCTATAGTTCATTTGTCAAGAGTAAGTTAGCTGTTATTAATTTAACTAGTTTAAAACATCTATCAGGTCTGAGGGGTAGAGCCAATCCCACTATTGCCTTTGGATTGGTTGTTGGGCAAAACCCTGGACATTTTGTTTTCTTCATTGCATAACAACATAAGAAGTTGTTTTTGGACTATTAACTATCTTGGCACCATCCAAGTGCAAAGCCAAAACTGCTTCTGCGGAGATCTGTAAAAATGATATTTTGAGTGTAGTTATTTGCTTGAGCAGCAACTATAATCCAGGCTATTCAACAGCCTAAAGGGCACCTGTGGCGTCATCATGAGATGTGCGGAGATCTGTAAAAAATGATATTTTGAGTGTAGTTATTTGCTTGAGCAGCAACTATAATCCAGGCTATTCAACAGCCTAAAGGGCACCTGTGGCTTTTATTTAGCTGACAGCCTGTGGCGCATCATGAAATGTACATGAGAGCTGAGTTTGAACAATTTGTTCTGCCTTCCAAGGACACTGCCATGTATATTGGCGATAATATTTTGGTCATACGGAGTTGATAACTGAAGTCCTATTTTGACTCTGCAACATTTTTACCTTTATTATACAGGTCCATTGATGATGATTATTTGTGACACAA

Fln Alignment:

AllPine_a_c5913___LGAMSPQQRCLVFPNNGSPMSIHGSLENANERGRSRRIDNNANQVDNRKQYQLDIDRILCGEDTRTTLMIKNIPNKYTSKMLLAAIDEQFRGTYDFIYLPIDFKNKCNVGYSFINMIDPLHIVPFFQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPIIFHSEGPNVGDQEPFPVGVNVRTRPGKSRTNNSGSHQGSPSNSGNGD
B8LKG9_______________IGVLSPQRKSRMFSSGGFTGSIANFSEGLNERGRSRRGDNSTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDEHHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFQPGAAGTGDQETFPMGPDVKVHPSENLAD--GNARESPTIANKDD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
911	87		12		0.992554
994		16	83		0.994512
995	16		83		0.994512
997	83			16	0.994512
1007	20	80			0.995493
1305		88		11	0.999937
1483	16		83		0.994512
1512	20		80		0.995493
1516	25	75			0.996473
1518	33			66	0.997454
1519	33			66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain