SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93749

Length: 2492 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene93749
AATGTGTCTCCAATCCCTTCACGTTGGAAGGGATTATGCCAAAGTGGTGAACAATTTCCTAATTCAACCTGCAACAGGAAATTGATTGGTGCTAGGTATTATTTGAATGGACTGGAGGCTGAGAAAGGAGAACCGTTGAAAACAGTGAGTTCGGGGGCTAACAGAGAATATAGATCTGCAAGAGATAGCGCAGGGCATGGCAGCCATACTGCGTCTATTGCAGCGGGAAGATGTGTGAGAAATATGAATTACAGTGGTTTAGGAGCTGGAGGTGCCCGGGGGGGTGCTCCACTGGCACGAATTGCAGTATACAAAACATGCTGGGAATCTGGATGTTATGATTCAGACATATTGGCAGCATTTGATGATACCATCAAAGATGGAGTGGATATCTTATCTCTTTCATTAGGTCCCGATCTTCCTGAAAGTGACTACTTCAGTGACGCGATCTCAGTGGGCTCATTCCATGCAACACGAAATGGAATTACTGTTGTTTGCTCAGTGGGGAATGATGGGGGTTCTGCTTCTGCAACAAATCTGGCTCCCTGGCTTATTACAGTGGCTGCTAGCTCTACAGACAGGGACTTTACTTCTGCCATCAAATTAATCGGGAATAATTCTACCTACCATGGTGAGAGTCTGAATGTAGCAAAGATGAATGCGCCTGCGGAGCTATTGTCTGCAGCAAATGCACATGCAAGATACTTTACTCCTTACCAATCGAGCTTCTGTCTAAACAGCTCTTTAGATAATTCTAAAGTGGCAGGAAAGATACTGGTTTGCCTGCATCCTGAAGATTCTTTCGAGTCAAGGATATCAAAAAGCCAAATAGTCCAAGCAGCTGGGGGATTAGGGATAATTCTCATTGATGAGATAGGCCAGAATCTTGCCATTCCTTTCGTGATCCCTGGTGCGATTGTGGACAACAAAGTGGGTGCTAAACTTCTTGCCTATATCAACACTACCAGGTTTCCTGGAGCCTATATTTTGCCTACAGAAACAGTCTTCGGAATCAGACCAGCACCTCAACTTGTAGCATTCTCCTCAAAAGGTCCAAACACACTAACACCGGACATCTTGAAGCCTGACCTAACAGCTCCAGGGTTGAATATACTAGCTGCATGGTCACCAGTAAAGAAAGGCATGCATTTCAACATTGCCTCAGGTACTTCCATGGCTTGTCCACATGTGTCAGGTATAGCTGCCTTGATTAAAGCTGCACACCCATCTTGGACTCCATCGGCTATTAAGTCTGCCCTTATGACCACAGCTAATGTGTTGGACAAAAATAAGAAAATCATGACTGCTGCTCCACGAGGACGGACTGCAAACCCATTTGGCTTTGGAGCGGGACTTCTAAACCCTATGAAAGTAGAAAATCCGGGACTTGTCTATGATGCTGGCCCTAAAGATTATGTCAACTTTCTCTGTGGGATTGGCTATGATAATTCATCTCTTAGGCGAGTCACAGGAGATCATAGTGTATGCACAAAGTTCCGTACAAAAGCTTCCAATCTCAATTGTCCTTCCATATCAATTTCAAAATTCGATGGAAAGAGCTCGGTCGTCCGAACAGTGACAAATGTAGGAAGCACAAATAGTACCTATCGAGTGAGGGTTTCTCCACCAAGAGGACTAAGTGTCCGTGTTGTTCCAAGTGTCCTGAAATTTAACTTCTATGGCCAAAAGATTTCTTTCACAGTGCAGTTCAAAAGGGTCGTCCAAACTCGGGGATACGTATTTGGATCACTGTCTTGGGTAAATGGAAAGCAAAGAGTAAGAATCCCTTTGGTAGTGGGTTGTTTCGCCCCTTAGGACTTGTGTGGGATTCACTTTAACATGAGTCGAATTTATCCTAGAGTAACATGGAATACTGAGGGCATTGATCAGTGATTTCTAAGGAAGGAAAGATACAGAGTTCTGGTTATTTTTTTGTGACAATATGTGTTTGCAGAATATAACTTCTCTCGGATCTCCGAGAAACAATTTGGAATTGCAAGATAGAAAGCTACGGACAGTCTTCTGTAAAGACAATGAAAATGAGGACCTCTGTATGGTTTGGAGAATCTCATTTGAAATCTGCTTGTCAAAATATATGATGAAGCAGGAAAGAATGGCGTGGCGTTGAAGTTTATGGAGAATGCTTCTTCCTGGAAACCATCCTTGGCACAAGTGCAAACAGACAGCATATCTTATATGATAAATAGTGAAATAAGTAGCGAAGTATTGGCTTGGTTTAGTTGGACAGTACTTGACAAAATTGAAACAAGATTAGATGTGCCTTCTTTCAAAGCACTGTACAACTTCTCCAAGGCCAAACTATTAATCCTGATTCTTTACTATCGTATTGTTTTTCGGTTTGGTGTTGCCAATTTTCAATACAGAAGCTGTAAGCCGAATTTCTCCTCAGGGAGGAATATACTTGAACTTTTTATTACTTTTGGCCAATATTCATGTTAAGCTTTTAGCCCCTCTGCAAATAGTAATTTGAA

Ace file of the UniGene sp_v3.0_unigene93749 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine protease-like protein [Nicotiana tabacum]	-	-	0.0	59%
FL-Next	tr=Subtilisin-like protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	41%
Sma3	Subtilisin-like protease	-	-	1.612e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cucumisin.	EC:3.4.21.25	-	0.0	-

Source	Gene names
Sma3	A43; AIR3; ARA12; ASP48; AT4g10510; AT4g10520; AT4g10540; AT4g10550; AT4g21630; AT4g26330; AT4g34980; At1g04110; At1g20160; At1g32940; At1g32960; At1g66210; At1g66210/T6J19_3; At1g66220; At2g04160; At2g05920; At3g14067; At3g14240; At4g10510; At4g10520; At

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	external side of plasma membrane	GO:0009897	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	plant-type cell wall modification	GO:0009827	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-
Sma3	stomatal complex morphogenesis	GO:0010103	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-
Sma3	mucilage metabolic process involved seed coat development	GO:0048359	Biological Process	-
Sma3	mucilage extrusion from seed coat	GO:0080001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Signal recognition particle, SRP54 subunit, GTPase	IPR000897	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Peroxisome membrane protein, Pex16	IPR013919	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Chromogranin, conserved site	IPR018054	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002317030.1	predicted protein [Populus trichocarpa]	0.0	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40764

Fln msg: your sequence is shorter than subject: 605 - 779

Fln protein: NVSPIPSRWKGLCQSGEQFPNSTCNRKLIGARYYLNGLEAEKGEPLKTVSSGANREYRSARDSAGHGSHTASIAAGRCVRNMNYSGLGAGGARGGAPLARIAVYKTCWESGCYDSDILAAFDDTIKDGVDILSLSLGPDLPESDYFSDAISVGSFHATRNGITVVCSVGNDGGSASATNLAPWLITVAASSTDRDFTSAIKLIGNNSTYHGESLNVAKMNAPAELLSAANAHARYFTPYQSSFCLNSSLDNSKVAGKILVCLHPEDSFESRISKSQIVQAAGGLGIILIDEIGQNLAIPFVIPGAIVDNKVGAKLLAYINTTRFPGAYILPTETVFGIRPAPQLVAFSSKGPNTLTPDILKPDLTAPGLNILAAWSPVKKGMHFNIASGTSMACPHVSGIAALIKAAHPSWTPSAIKSALMTTANVLDKNKKIMTAAPRGRTANPFGFGAGLLNPMKVENPGLVYDAGPKDYVNFLCGIGYDNSSLRRVTGDHSVCTKFRTKASNLNCPSISISKFDGKSSVVRTVTNVGSTNSTYRVRVSPPRGLSVRVVPSVLKFNFYGQKISFTVQFKRVVQTRGYVFGSLSWVNGKQRVRIPLVVGCFAP*

Protein Length: 606

Fln nts: AATGTGTCTCCAATCCCTTCACGTTGGAAGGGATTATGCCAAAGTGGTGAACAATTTCCTAATTCAACCTGCAACAGGAAATTGATTGGTGCTAGGTATTATTTGAATGGACTGGAGGCTGAGAAAGGAGAACCGTTGAAAACAGTGAGTTCGGGGGCTAACAGAGAATATAGATCTGCAAGAGATAGCGCAGGGCATGGCAGCCATACTGCGTCTATTGCAGCGGGAAGATGTGTGAGAAATATGAATTACAGTGGTTTAGGAGCTGGAGGTGCCCGGGGGGGTGCTCCACTGGCACGAATTGCAGTATACAAAACATGCTGGGAATCTGGATGTTATGATTCAGACATATTGGCAGCATTTGATGATACCATCAAAGATGGAGTGGATATCTTATCTCTTTCATTAGGTCCCGATCTTCCTGAAAGTGACTACTTCAGTGACGCGATCTCAGTGGGCTCATTCCATGCAACACGAAATGGAATTACTGTTGTTTGCTCAGTGGGGAATGATGGGGGTTCTGCTTCTGCAACAAATCTGGCTCCCTGGCTTATTACAGTGGCTGCTAGCTCTACAGACAGGGACTTTACTTCTGCCATCAAATTAATCGGGAATAATTCTACCTACCATGGTGAGAGTCTGAATGTAGCAAAGATGAATGCGCCTGCGGAGCTATTGTCTGCAGCAAATGCACATGCAAGATACTTTACTCCTTACCAATCGAGCTTCTGTCTAAACAGCTCTTTAGATAATTCTAAAGTGGCAGGAAAGATACTGGTTTGCCTGCATCCTGAAGATTCTTTCGAGTCAAGGATATCAAAAAGCCAAATAGTCCAAGCAGCTGGGGGATTAGGGATAATTCTCATTGATGAGATAGGCCAGAATCTTGCCATTCCTTTCGTGATCCCTGGTGCGATTGTGGACAACAAAGTGGGTGCTAAACTTCTTGCCTATATCAACACTACCAGGTTTCCTGGAGCCTATATTTTGCCTACAGAAACAGTCTTCGGAATCAGACCAGCACCTCAACTTGTAGCATTCTCCTCAAAAGGTCCAAACACACTAACACCGGACATCTTGAAGCCTGACCTAACAGCTCCAGGGTTGAATATACTAGCTGCATGGTCACCAGTAAAGAAAGGCATGCATTTCAACATTGCCTCAGGTACTTCCATGGCTTGTCCACATGTGTCAGGTATAGCTGCCTTGATTAAAGCTGCACACCCATCTTGGACTCCATCGGCTATTAAGTCTGCCCTTATGACCACAGCTAATGTGTTGGACAAAAATAAGAAAATCATGACTGCTGCTCCACGAGGACGGACTGCAAACCCATTTGGCTTTGGAGCGGGACTTCTAAACCCTATGAAAGTAGAAAATCCGGGACTTGTCTATGATGCTGGCCCTAAAGATTATGTCAACTTTCTCTGTGGGATTGGCTATGATAATTCATCTCTTAGGCGAGTCACAGGAGATCATAGTGTATGCACAAAGTTCCGTACAAAAGCTTCCAATCTCAATTGTCCTTCCATATCAATTTCAAAATTCGATGGAAAGAGCTCGGTCGTCCGAACAGTGACAAATGTAGGAAGCACAAATAGTACCTATCGAGTGAGGGTTTCTCCACCAAGAGGACTAAGTGTCCGTGTTGTTCCAAGTGTCCTGAAATTTAACTTCTATGGCCAAAAGATTTCTTTCACAGTGCAGTTCAAAAGGGTCGTCCAAACTCGGGGATACGTATTTGGATCACTGTCTTGGGTAAATGGAAAGCAAAGAGTAAGAATCCCTTTGGTAGTGGGTTGTTTCGCCCCTTAG___GACTTGTGTGGGATTCACTTTAACATGAGTCGAATTTATCCTAGAGTAACATGGAATACTGAGGGCATTGATCAGTGATTTCTAAGGAAGGAAAGATACAGAGTTCTGGTTATTTTTTTGTGACAATATGTGTTTGCAGAATATAACTTCTCTCGGATCTCCGAGAAACAATTTGGAATTGCAAGATAGAAAGCTACGGACAGTCTTCTGTAAAGACAATGAAAATGAGGACCTCTGTATGGTTTGGAGAATCTCATTTGAAATCTGCTTGTCAAAATATATGATGAAGCAGGAAAGAATGGCGTGGCGTTGAAGTTTATGGAGAATGCTTCTTCCTGGAAACCATCCTTGGCACAAGTGCAAACAGACAGCATATCTTATATGATAAATAGTGAAATAAGTAGCGAAGTATTGGCTTGGTTTAGTTGGACAGTACTTGACAAAATTGAAACAAGATTAGATGTGCCTTCTTTCAAAGCACTGTACAACTTCTCCAAGGCCAAACTATTAATCCTGATTCTTTACTATCGTATTGTTTTTCGGTTTGGTGTTGCCAATTTTCAATACAGAAGCTGTAAGCCGAATTTCTCCTCAGGGAGGAATATACTTGAACTTTTTATTACTTTTGGCCAATATTCATGTTAAGCTTTTAGCCCCTCTGCAAATAGTAATTTGAA

Fln Alignment:

AllPine_a_c5124___VSPIPSRWKGLCQSGEQFPNSTCNRKLIGARYYLNGLEAEKGEPLKTVSSGANREYRSARDSAGHGSHTASIAAGRCVRNMNYSXXXXXXXXXXXXXXR--IAVYKTCW-ESGCYDSDILAAFDDTIKDGVDILSLSLGP-DLPESDYFSDAISVGSFHATRNGITVVCSVGNDG-GSASATNLAPWLITVAASSTDRDFTSAIKLIGNNSTYHGESLNVAKMNAPA--ELLSAANAHARYFTPYQSSFCLNSSLDNSKVAGKILVCLHPEDSFESRISKSQIVQAAXXXXXXXXXXXGQNLAIPF-VIPGAIVDNKVGAKLLAYINTTRFPGAYILPTETVFGIRPAPQLVAFSSKGPNTLTPDILKPDLTAPGLNILAAWSPVKKG-----------MHFNIASGTSMACPHVSGIAALIKAAHPSWTPSAIKSALMTTANVLDKNKKIMTAAPRGRTANPFGFGAGLLNPMKVENPGLVYDAGPKDYVNFLCGIGYDNSSLRRVTGDHSVCTKFRTKA---SNLNCPSISISKF---DGKSSVVRTVTN-VGSTNSTYRVRVSPPRGLSVRVVPSVLKFNFYGQKISFTVQFKRV-VQTRGYVFGSLSWVNGKQRVRIPLVV
Q40764_______________MGPVPSRWKGACVKGENFNVSNCNRKIIGARYYSGGEDDDLKKNSKPKSIWP--ESRTARDYQGHGTYTAATAAGSFVDNANYNGLANGTARGGSASSSTRIAMYRVCGLDYGCPGVQILAAFDDAVKDGVDIVSISIGVRSSNQADFVKDAIAIGAFHATQKGILVVSSAGNEGPDSQTVVNAAPWIFTVGATSIDREFLSNV-VLGNGKIIKGKGITMSNLSHSAVHPLVYAGSIPDKSSYPVAASNCLLDSLDASKAKGNVVVCI-ANDTAASRYIMKLAVQDAGGIGMVVVEDIQIFEAFDYGTFPATAVSKTSATEIFSYIKSNRNPVATITLTEVVTNYIPAPVIASFSSRGPGGLTQNILKPDISAPGVNIIAAWNPPNQSDEDTVVSEMTPSTFNMMSGTSVAVPHVTGAAAFVKSINPTWSSSAIRSALMTTAIVRNNMGKLLT-NESDIPGTPFDFGAGVVNPIGALQPGLVYETSIDDYFHFLCNYGLDSENIKIIAANESYKCPSGVNADLISNMNYPSIAISKLGIKNGSTTISRSVTNFVPEQAPTYKVTIDAPPGLNVKVSPEILHFSKTSKKLSFNVVFTPTNVATKGYAFGTLVWSDGKHNVRSPFAV

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1875		75	25	0.996473
2173	85	14		0.993533
2174	85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain