SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93691

Length: 1412 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93691

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug resistance-associated protein 1, 3 (Mrp1, 3), abc-transoprter, putative n=1 Tax=Ricinus communis RepID=B9SN54_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Multidrug resistance protein ABC transporter family	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.47e-10	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	3.058e-40	-

Source	Gene names
Sma3	At1g04120; At1g30400; At1g30410; At1g30420; At2g34660; At2g47800; At3g13080; At3g13090; At3g13100; At3g21250; At3g59140; At3g60160; At3g60970; At3g62700; B1065G12.13; B1157F09.14; CHLREDRAFT_119551; CHLREDRAFT_143900; CHLREDRAFT_54676; EST1; EST2; EST3; E

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	folic acid transporter activity	GO:0008517	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21250.2	MRP6, ABCC8 multidrug resistance-associated protein 6 chr3:7457668-7463261 REVERSE LENGTH=1464	69%
RefSeq	Arabidopsis thaliana	NP_188762.3	multidrug resistance-associated protein 6 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002327533.1	multidrug resistance protein ABC transporter family, partial [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSU0

Fln msg: your sequence is longer than subject: 417 - 131

Fln protein: MYYLASARELTRINGTTKAPVMNNAAETALGAVTIRAFNVVERFKEKNLNLIDTDASLFFHTNAAMEWLILRLESLGNIILFTSALLLVSLPSSSITPGFAGLALSYALSLTSCQVFVVQWQCNLSNFIVSVERIKQYMNLPSEPPAIIESSRPPVSWPSEGRIQLETLKIRYRPNAPLVLKGVNCTFMGGKRVGVVGRTGSGKTTLISALFRLIEPAGGRILIDDLDICPIGLCDLRSKLSIIPQEPTLFKGTIRSNLDPLGLYSDHEIWEALQKCQMGKSFEDLPNRLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEATASIDSATDALVQKVIRHEFSNCTVITIAHRVPTVIDSDMVLTLSDGKLAEYDEPAKLMENKSSLFAKLVAEYWSNCSYNSMQNLADCK*

Protein Length: 418

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTTTTGGTGGTTGTCATTCCGGTGCTCTTTATCACTAGATGGATCCAA_-_ATGTATTATCTAGCTTCTGCAAGAGAATTAACAAGGATCAATGGCACTACTAAAGCACCAGTAATGAACAATGCTGCTGAAACAGCATTGGGTGCAGTGACAATCAGAGCATTTAATGTGGTAGAAAGATTCAAGGAAAAGAATTTGAATCTTATTGATACAGATGCAAGTCTTTTCTTTCACACAAACGCTGCTATGGAATGGTTGATCCTAAGGTTGGAATCACTGGGAAACATTATCCTTTTCACTTCAGCTCTTCTCCTCGTTTCATTGCCTTCGAGTAGCATAACTCCTGGATTTGCGGGTCTTGCTCTCTCATATGCACTCTCACTTACATCTTGTCAAGTATTTGTGGTGCAATGGCAATGCAATCTCTCCAACTTTATTGTTTCTGTGGAGCGTATAAAGCAGTACATGAACTTGCCATCTGAGCCACCAGCAATTATAGAAAGCAGCAGACCTCCTGTCTCATGGCCAAGTGAAGGTAGAATACAGTTAGAAACCTTGAAGATAAGGTACCGCCCTAATGCCCCTCTCGTTCTGAAAGGTGTTAACTGCACATTTATGGGTGGGAAAAGAGTGGGAGTGGTAGGACGAACAGGCAGTGGTAAAACGACTCTTATTTCAGCCTTATTTCGACTCATTGAACCAGCTGGAGGAAGAATTCTGATCGATGACCTGGACATTTGCCCTATAGGTCTTTGTGATCTGAGGTCAAAGCTTAGTATCATTCCTCAAGAGCCAACCCTATTCAAGGGGACCATAAGAAGTAATTTGGATCCCCTAGGCTTGTACTCAGATCATGAAATTTGGGAGGCGTTACAAAAATGTCAAATGGGCAAGTCCTTTGAAGATTTACCGAACCGACTTGATTCTTCTGTGAGTGACGAAGGGGAGAATTGGAGTGCTGGTCAAAGGCAACTCTTGTGCTTAGGTCGTGTTCTCCTAAAGCGTAACCGAATTCTGGTTCTGGACGAAGCAACTGCCTCCATCGACTCTGCCACAGATGCACTTGTTCAGAAAGTCATCAGACACGAATTTTCCAATTGCACTGTCATAACAATTGCCCACAGGGTGCCCACAGTCATTGACAGTGACATGGTCTTGACCCTCTCTGATGGCAAACTTGCAGAATATGATGAACCTGCAAAACTGATGGAAAATAAATCATCATTATTCGCAAAGCTTGTGGCGGAGTATTGGTCCAATTGTAGCTACAATTCCATGCAAAATTTGGCTGATTGCAAGTGA___TTTCTATATCTTTGAAACCAGGCCAATGCCAGAGTCATAGTACACCTAAATTAATAATGCCAATTCAATTTAGGACTCCTAATTTGA

Fln Alignment:

AllPine_a_c4109___MGKSFEDLPNRLDSSVSDEGENWSAGQRQLLCLGRVLLKRNRILVLDEATASIDSATDALVQKVIRHEFSNCTVITIAHRVPTVIDSDMVLTLSDGKLAEYDEPAKLMENKSSLFAKLVAEYWSNCSYNSM
A9NSU0_______________MGKSIEDLPNQLDSSVSDEGENWSAGQRQLLCLGRVLLRRNRILVLDEATASIDSATDALLQKVIRHEFSNCTVITIAHRVPTVIDSDMVLTLSDGKLAEYDNPAKLMENKSSLFAKLVAEYWSNCSRSSM

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
980	16			83	0.994512
1020		60		40	1.0
1121		25		75	0.996473
1135		80		20	0.995493
1185		85		14	0.993533
1192	85	14			0.993533
1193	14			85	0.993533
1230			60	40	1.0
1319	20		80		0.995493
1321	80		20		0.995493
1378		33		66	0.997454
1379	66	33			0.997453
1380	66		33		0.997453
1381		33		66	0.997453
1382	66			33	0.997453
1385			66	33	0.997452
1386	33	66			0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain