SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93657

Length: 1205 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93657

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB88259.1\| putative protein [Arabidopsis thaliana] dbj\|BAC42665.1\| unknown protein [Arabidopsis thaliana] gb\|AED91834.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	79%

Source	Gene names
Sma3	At5g12950; At5g12950/T24H18_120; At5g12960; CHLREDRAFT_188291; CHLREDRAFT_188292; GSVIVT00024646001; GSVIVT00024659001; OJ1225_F07.14; Os02g0195500; Os06g0612900; Os06g0613000; OsI_06226; OsI_23690; OsI_23691; OsI_23693; OsI_23694; OsJ_05746; OsJ_21963; P

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	L-arabinose metabolic process	GO:0046373	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Metridin-like ShK toxin	IPR003582	-	-
Sma3	Protein of unknown function DUF1680	IPR012878	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) chr5:4093117-4096806 FORWARD LENGTH=861	74%
RefSeq	Arabidopsis thaliana	NP_196799.1	uncharacterized protein [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002297785.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GU88

Fln msg: Distance to subject end: 369 aas, your sequence is shorter than subject: 401 - 864

Fln protein: RRDLGCHSNFLHEISLHKVRLDADSAYGEAQKTNLAYLLMLDVDSLVWSFRKTAGLATPGSPYGSWESPDCELRGHFVGHYMSASALMWASTHNKELQLKMQAVVSALYECQRKLGTGYLSAFPSELFDRFEAIQPVWAPYYTIHKIMAGLLDQYKLAGNAQAFKMVTWMADYFYNRVQHVISKHTIERHWRSLNEETGGMNDILYQLYLLSGSRKHLSLAHLFDKPCFLGPLALQADSLSGFHANTHIPVVIGSQMRYEITGDPLYKEIGTYFMDIVNSSHSYATGGTSAGEFWFNPNRLASSLGTENAESCTAYNMLKVARRLFRWTKKMAYADYYERVLINGVLTIQRGSDPGVMIYMLPLGPGKSKAVSYHGWGTPFDSFWCCYGTGIESFSKLGDS

Protein Length: 402

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTTTACATGAGATTTCATTGCACAAAGTGAGACTCGATGCTGATTCTGCTTACGGTGAGGCTCAAAAGACGAATTTGGCGTATTTGTTGATGCTGGATGTTGACAGCTTAGTTTGGAGTTTTAGAAAAACAGCAGGTCTTGCTACTCCCGGTTCTCCTTATGGCAGTTGGGAGAGTCCAGATTGCGAGCTCCGAGGTCATTTTGTAGGGCATTACATGAGTGCATCAGCACTTATGTGGGCAAGCACTCACAATAAGGAACTCCAGTTGAAAATGCAAGCTGTTGTTAGTGCTCTTTATGAATGCCAGCGTAAACTAGGGACAGGCTATCTGTCGGCATTTCCTTCAGAGCTGTTTGACCGTTTTGAAGCTATTCAACCTGTTTGGGCACCATATTATACTATTCACAAGATCATGGCAGGATTGTTGGATCAATACAAACTGGCTGGAAATGCTCAAGCGTTTAAGATGGTCACATGGATGGCTGATTATTTTTACAATCGTGTACAACATGTTATATCTAAACACACAATTGAAAGGCATTGGCGTTCTCTCAATGAGGAGACTGGTGGCATGAATGATATTCTCTATCAGCTGTACTTGTTGAGTGGATCAAGAAAACATCTCAGTTTGGCACATCTCTTCGATAAACCTTGCTTTTTGGGTCCTTTAGCTCTTCAGGCGGATAGCCTCTCTGGGTTTCATGCCAATACTCATATCCCGGTGGTTATTGGATCTCAAATGAGATATGAAATAACAGGTGACCCTTTATATAAGGAAATCGGCACATACTTCATGGATATTGTTAATTCTTCACATAGTTATGCTACTGGTGGAACATCTGCTGGTGAATTTTGGTTTAATCCAAACCGTCTTGCAAGCTCACTTGGGACCGAAAACGCAGAGTCTTGTACTGCTTACAACATGCTGAAGGTTGCCCGTCGTCTATTTCGCTGGACCAAAAAAATGGCATATGCTGATTATTATGAACGTGTATTGATCAATGGAGTTCTCACTATTCAGCGAGGAAGTGATCCTGGGGTTATGATTTACATGCTTCCTTTAGGTCCTGGAAAATCAAAGGCTGTTAGTTACCATGGTTGGGGAACCCCATTCGATTCATTTTGGTGTTGTTATGGGACAGGTATTGAATCATTTTCAAAACTGGGTGACTCAAT

Fln Alignment:

AllPine_a_c3357___GCHSNFLHEISLHKVRLDADSAYGEAQKTNLAYLLMLDVDSLVWSFRKTAGLATPGSPYGSWESPDCELRGHFVGHYMSASALMWASTHNKELQLKMQAVVSALYECQRKLGTGYLSAFPSELFDRFEAIQPVWAPYYTIHKIMAGLLDQYKLAGNAQAFKMVTWMADYFYNRVQHVISKHTIERHWRSLNEETGGMNDILYQLYLLSGSRKHLSLAHLFDKPCFLGPLALQADSLSGFHANTHIPVVIGSQMRYEITGDPLYKEIGTYFMDIVNSSHSYATGGTSAGEFWFNPNRLASSLGTENAESCTAYNMLKVARRLFRWTKKMAYADYYERVLINGVLTIQRGSDPGVMIYMLPLGPGKSKAVSYHGWGTPFDSFWCCYGTGIESFSKLGDS
F6GU88_______________GSNSNFLKEMSLHDVRLDSDSLHGRAQQTNLDYLLILDVDRLVWSFRKTAGLSTPGLPYGGWEAPNVELRGHFVGHYMSASAQMWASTHNDTLKEKMSAVVSALATCQEKMGTGYLSAFPSELFDRFEAIKPVWAPYYTIHKILAGLLDQYTFAGNSQALKMMTWMVEHFYKRVQNVITMYSLERHWLSLNEETGGMNDVLYRLYSITGDQKHLVLAHLFDKPCFLGLLAVQADSISGFHANTHIPVVIGSQMRYEVTGDPLYKAIGTFFMDIVNSSHSYATGGTSVGEFWSDPKRLASTLQRENEESCTTYNMLKVSRHLFRWTKEVVYADYYERALTNGVLSIQRGTDPGVMIYMLPLGRGDSKARSYHGWGTKFDSFWCCYGTGIESFSKLGDS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
637			33	66	0.997452
639		33	66		0.997452
640			33	66	0.997452
645		33	66		0.997452
647			66	33	0.997452
650			33	66	0.997452
653	66			33	0.997452
654	66		33		0.997452
655			66	33	0.997452
656	66	33			0.997452
658	66	33			0.997452
659	66			33	0.997453
670		33		66	0.997452
760	25	75			0.996473
852		83		16	0.994512
853		16		83	0.994512
974		20	80		0.995493
975	20		80		0.995493
1088		20		80	0.995493
1090	80	20			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain