SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93619

Length: 1595 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93619

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	duplicated SANT DNA-binding domain-containing protein [Arabidopsis thaliana] gb\|AAK32932.1\|AF367345_1 AT5g45420/MFC19_9 [Arabidopsis thaliana] gb\|AAL69537.1\| AT5g45420/MFC19_9 [Arabidopsis thaliana] dbj\|BAC42132.1\| unknown protein [Arabidopsis thaliana] g	-	-	0.0	41%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	44%

Source	Gene names
Sma3	At5g45420; At5g45420/MFC19_9; GSVIVT00015818001; OsI_27893; PHYPADRAFT_211784; POPTRDRAFT_676503; RCOM_0519560;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	SANT domain	IPR017884	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: I1K4W6

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MDYYDEDPRPRFQLQASSIPAPQQSASIDRKHAAFCIATGILIFSYGCLLPGIWQILLTWIGLSLAIGPFAPISLTGGDIRVGCGEIIEEPQIETPKPEPERKNYRGKAKRSENSNPEIPILNIPRSDEIPEGNKNGEAGAKVSVVSRVSDDGEWTAEDVELLKKQLAKNPPGKPGRYEAIAEAFGGARSVDSIVKKAKSLGERKLGDDDSFAKFLAQRKISDKIEMNLAEGKDLADDEEDKGKKFGWSSAEDIALLNALKVFPKDTNMRWEKVAAAVPGKSKTQCMKRFSELKLNFRNSKASDT*

Protein Length: 307

Fln nts: CGTCGTGACCTTTGCTATGGGGATGGCTCTAGATCTCCCATATGAACTAGACTTCGCGTACTTATAATAACCTGTCACTTCTTCAAATTCAAAGATGGTCTGCCGTCGGAGGTCAGCGCCAACCCCCTTAAAGGCTGAGCCTTCTCGACTCAGCACCATCTTGGATTCCGATTCAGATACTTAACACCTATGAACGAACAAGTAGTTCTGAAAAAATCTATTGAATTTAAAACTATCACTCAGTGAGGTCGCTGATCTGCCAAAGCGAACCCACGCAGTTCTGAAAAAATCTGTTGAATTTAAAACTATCGCTCATTAAGGTCTCTGATCTGCCAAAGCGACCCCTTGCTTATTTAAAACCAGTGCATTTGCTCGGATCAATCAGTGATATATTAACATGCTCGTGTGATATTTCAGTTTAGAC_-_ATGGATTACTACGACGAAGACCCAAGGCCCCGTTTTCAGTTGCAGGCATCTTCCATACCCGCTCCCCAACAATCTGCTTCAATCGACAGAAAACACGCAGCATTTTGCATAGCAACAGGAATCTTAATCTTCAGTTATGGCTGCCTTTTGCCCGGCATTTGGCAGATCTTACTGACATGGATCGGCTTGTCACTCGCCATTGGACCGTTCGCCCCGATTTCCCTCACCGGTGGCGACATCAGAGTCGGCTGCGGCGAAATCATTGAAGAACCGCAGATCGAAACCCCAAAGCCAGAACCCGAACGGAAAAATTATAGAGGAAAGGCCAAGCGCTCAGAGAACAGTAATCCCGAAATACCCATTTTAAATATCCCCAGATCAGACGAAATTCCGGAAGGAAACAAAAATGGAGAAGCAGGTGCTAAGGTTTCTGTGGTTTCTAGGGTTTCTGATGACGGAGAATGGACGGCGGAGGATGTTGAATTGCTGAAGAAACAGCTGGCGAAAAACCCTCCTGGTAAGCCCGGGCGCTACGAGGCCATTGCCGAAGCTTTTGGAGGGGCACGCAGCGTGGATTCCATTGTTAAGAAGGCCAAATCGCTCGGGGAAAGGAAGCTAGGGGACGATGATTCGTTTGCTAAGTTTCTGGCGCAGAGGAAAATTTCAGACAAAATCGAGATGAATTTGGCGGAGGGCAAAGATTTAGCGGATGATGAGGAGGACAAAGGGAAGAAGTTCGGGTGGAGCTCTGCAGAAGATATAGCACTTCTGAATGCTCTGAAGGTCTTCCCCAAAGACACCAACATGAGGTGGGAGAAGGTTGCTGCTGCTGTTCCAGGTAAATCTAAAACACAATGCATGAAAAGATTTTCTGAATTGAAGCTGAATTTTCGCAATTCAAAGGCATCAGATACATAAAGGTACGGGCATTCACAATATGGAGGAGAAGAGGAAGATTTTCGAATTCTAGAGATTCATTTGCAAAGAGAGGGAGAGGAAGAGGGTTTCTTGTTCTTTGAAGGGTGTTGAAATGTATGCGCGCTGTAACGGAAAATGCAAAAGGAATGGCCAGTGTGCACCTCCAAGCCCCGCAGCCATAGTGAGAGTATGGACGTCTGATAAGCATTGAGTTACTTGGGCAGCCCAAAATTGAGAAAAATAAAGCGCACAA

Fln Alignment:

AllPine_a_c2563___MDYYDEDPRPRFQLXXXXXXXXXXXXXXDRK------HAAFCIATGILIFSYGCLLPGIWQILLTWIGLSLAIGPFAPISLTGGDIRVGCGEIIEEPQIETPKPEPER------KNYRGKAKRSENSNPEI-PILNIPRSDEIPEGNKNGEAGAKVSVVSRVSDDGEWTAEDVELLKKQLAKNPPGKPGRYEAIAEAFGGARSVDSIVKKAKSLGERKLGDDDSFAKFLAQRKISDK--IEMNLAEGKDLADDEEDKGKKFGWSSAEDIALLNALKVFPKDTNMRWEKVAAAVPGKSKTQCMKRFSELKLNFRNSKAS
I1K4W6_______________MEFLDEDARPRFVFQSGAAARSSEPPHPIHKPTKPFLFATVSLSSLFLTLSLFFLEAEPFKSLLFWLALSLLVGPFAPPSITGGDVRVGRGEVVNFPD---PEPEPDEDASRKSSQRRSRQRRAEEASAAVGPVVSVSAAE------KRKESSGIEKRATVVEEEKGWSEEDVEVLKKQMVKNPVGKPGRWEAIAAAFGGRHGVDSVIKKAKELGEKRVDDSESYALFLKKRKALDKRVVEENADEGEKVVDN--------GWSSAEDIALLNALKAFPKEVSMRWEKVAAAVPGRSKAACMKRFAELKKGFRTAKAA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1200	80		20		0.995493
1273	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain