SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93606

Length: 1916 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene93606 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	monosaccharide transporter [Populus tremula x Populus tremuloides]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02050.1	STP7 sugar transporter protein 7 chr4:898387-900095 REVERSE LENGTH=513	57%
RefSeq	Arabidopsis thaliana	NP_192114.1	sugar transport protein 7 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002310647.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV13

Fln msg: Overlapping hits, possible frame ERROR between 1310 and 1294,

Fln protein: MAGGGFVATGPVVQKNYPGGMTLYVLVTCIVAATGGLLFGYDIGISGGVTSMPAFLKKFFPDVYKKESTAKPSNYCKFDSQILTSFTSSLYIAGLVSSFMASATTRAFGRQKSMLLGGSTFLTGAAINGAAVNVEMLILGRILLGLGVGFSIQCVPIYLSEMAPPRLRGALNIGFQLFLGIGVLSANLINYRTAKIQNWGWRLSLGLAAVPALIMLAGSFTLPDTPNSLIERGQMEKARAVLERIRGTPNVQEELQDMIEATEVSKTVKHPFRNIIRRKYRPQLVMALAIPFFQQLTGINVIAFYAPVLFKTIGFGSNAALLAAVILGVMNLASIIISIFIVDKVGRRGLFLQGGLQMIICQVLIAVILALKFGDNGMSKGYSSFTVFLFCAYALGFGWSWGPLSWLVxxxxxxxLEIRSAGQTINVSVNLLVTFVLSQVFLSMLCHLRFGIFLFYAVWTVIMTLFVYFLLPETKNVPIEEMTRIWQEHWFWSKMKLDYSTPGGEPVKSSNQKNLESVENGMPT*

Protein Length: 526

Fln nts: TACATGGGGGGTAGCAGAGGACTCTAGAGGAGGAGAAGCCTGGTCTTGTTGTTCAGTGTGGAGTCATC_-_ATGGCAGGAGGTGGGTTTGTGGCCACTGGCCCTGTTGTGCAGAAGAACTATCCTGGTGGAATGACTCTGTATGTGCTGGTCACTTGCATCGTTGCAGCCACAGGAGGGCTCCTCTTTGGCTATGACATTGGAATCTCAGGTGGAGTTACATCCATGCCCGCTTTCCTGAAGAAATTTTTCCCAGACGTGTACAAGAAGGAATCCACAGCCAAGCCCAGCAACTACTGCAAGTTTGACAGCCAGATACTGACTTCCTTCACTTCTTCGCTTTATATAGCTGGGCTGGTGTCGTCCTTCATGGCCTCGGCCACAACAAGAGCTTTTGGACGACAGAAGTCAATGCTGCTGGGAGGATCAACCTTCCTCACTGGTGCAGCTATCAATGGGGCTGCAGTCAATGTAGAAATGCTCATCCTGGGACGTATTTTGCTTGGTTTGGGCGTGGGTTTCTCTATACAATGCGTGCCTATTTATTTGTCGGAAATGGCCCCTCCCAGACTGAGGGGAGCTCTCAACATTGGCTTCCAACTATTTCTAGGAATTGGGGTCCTTTCTGCAAATCTGATAAACTATCGCACTGCCAAGATCCAGAATTGGGGGTGGCGGCTCTCTCTGGGTCTAGCAGCTGTCCCAGCGTTGATAATGTTGGCAGGTTCCTTCACCCTACCCGACACCCCCAACAGTCTAATCGAGAGGGGGCAGATGGAGAAGGCCAGGGCCGTGCTGGAGAGGATCCGCGGCACGCCAAACGTGCAGGAGGAGTTGCAAGACATGATAGAGGCCACCGAGGTTTCCAAGACGGTGAAGCACCCCTTCCGCAACATTATCAGAAGGAAATACAGACCTCAACTGGTCATGGCTCTGGCCATTCCCTTCTTTCAGCAGCTCACGGGCATCAATGTTATCGCGTTTTATGCTCCAGTTCTCTTCAAGACCATAGGATTTGGGTCAAATGCTGCCCTCTTGGCCGCAGTTATTCTTGGAGTCATGAATTTGGCTTCCATCATAATCTCCATTTTCATCGTTGACAAGGTAGGACGGAGGGGCCTGTTCCTCCAGGGTGGACTGCAGATGATCATTTGCCAGGTGTTGATTGCCGTGATCCTGGCGTTGAAGTTCGGGGACAATGGAATGAGCAAGGGATATTCATCATTTACCGTGTTCTTGTTCTGCGCGTATGCCCTTGGCTTTGGATGGTCGTGGGGTCCTCTCAGCTGGTTGGTTxxxxxxxxxxxxxxxxxxxxxCTTGAAATTCGGTCGGCAGGGCAAACTATCAATGTATCAGTTAATCTGTTGGTCACCTTTGTGTTGTCACAGGTTTTCCTGTCCATGCTCTGTCATTTGAGATTCGGCATATTTCTGTTTTATGCCGTTTGGACGGTGATCATGACTCTGTTCGTCTATTTTCTCCTCCCCGAGACCAAAAATGTGCCAATTGAAGAGATGACACGAATATGGCAAGAGCACTGGTTTTGGAGCAAAATGAAATTAGATTATTCCACCCCTGGCGGTGAGCCTGTCAAATCTTCCAACCAAAAAAATCTGGAATCCGTAGAAAATGGCATGCCTACTTAA___TACACAACAACAAAAATAAAACGAAAGGGAATGAGCTGAGCTTTGAAGTTTAGAGGCAAAATAACCAAATTCACAGTTTACCATGCAAACACTTCAACTTCCTTTGATGGTGGGCTTCTGTTATCAAGCTTGTACTAATCTGGAACGCTGATCGTGATGAGTGTGTAGTTAGAGAAACGAATCGAATTGTGGTCACCGAAATTCGATGGTTTTTATTGTAAATGTGGTCGTCATATCTGAGTTGTGGGCGTGACATTGTAGATTATTATAATTCA

Fln Alignment:

AllPine_a_c2237___GGFVATGPVVQKNYPGGMTLYVLVTCIVAATGGLLFGYDIGISGGVTSMPAFLKKFFPDVYKKESTAKPSNYCKFDSQILTSFTSSLYIAGLVSSFMASATTRAFGRQKSMLLGGSTFLTGAAINGAAVNVEMXXXXXXXXXXXXGFSIQCVPIYLSEMAPPRLRGALNIGFQLFLGIGVLSANLINYRTAKIQNWGWRLSLGLAAVPALIMLAGSFTLPDTPNSLIERGQMEKARAVLERIRGTPNVQEELQDMIEATEVSKTVKHPFRNIIRRKYRPQLVMALAIPFFQQLTGINVIAFYAPVLFKTIGFGSNAALLAAVILGVMNLASIIISIFIVDKVXXXXXXXXXXXQMIICQVLIAVILALKF-GDNGMSKGYSSFTVFLFCAYALGFGWSWGPLSWLVxxxxxxLEIRSAGQTINVSVNLLVTFVLSQVFLSMLCHLRFGIFLFYAVWTVIMTLFVYFLLPETKNVPIEEMTRIWQEHWFWSKMKLDYSTPGGEPVKSSNQKNLESVENG
A9NV13_______________GGFVASGPVVTKNYAGGMTLYVLVTCIVAATGGLLFGYDIGISGGVTSMESFLKKFFPDVYKKESTAKNSDYCKFDSQILTSFTSSLYIAGLVSSFMASATTRAFGRQKSMLMGGFTFLSGAALNGAAVNVAMLILGRILLGLGVGFAVQSVPIYLSEMAPPRMRGALNIGFQLFLGIGVLSANLINYRTAKIQNWGWRLSLGLAAVPALIMLAGSFTLPDTPNSLIERGQLEKAKAVLVRIRGTPDVQEELQDMIEACEISNKMKHPFRNIIRRKYRPQLVMALAIPFFQQLTGINVIAFYAPVLFKTIGFGSDAALLAAVILGVMNLSSIIISIFIVDKLGRRALFLEGGLQMIICQVLIAIILALKFGGEGGMTKGYSSFVVFLFCAYALGFGWSWGPLSWLVxxxxxxLEIRSAGQTINVAVNLLVTFVLSQVFLSMLCHFRFGIFLFYAGWTVIMTTFVYFLLPETKNVPIEEMTRVWKEHWFWSKMNLDYSTPGDD-----HQKNLELAENG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1314	25		75		0.996473
1416	66		33		1.0
1787	87			12	0.992554
1797		12	87		0.992554
1810	85			14	0.993533
1812		14	85		0.993533
1834	14		85		0.993533
1873	16	83			0.994512
1896		33		66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain