SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93596

Length: 1794 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93596

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	COP9 signalosome complex subunit 1 [Arabidopsis thaliana] sp\|P45432.2\|CSN1_ARATH RecName: Full=COP9 signalosome complex subunit 1; Short=CSN complex subunit 1; AltName: Full=Constitutive photomorphogenesis protein 11; AltName: Full=Protein FUSCA 6 gb\|AAK2	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	Gene names
Sma3	VITISV_025856;

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G61140.1	" FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31, SK31 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain chr3:22626335-22628895 FORWARD LENGTH=441"	74%
RefSeq	Arabidopsis thaliana	NP_567109.1	COP9 signalosome complex subunit 1 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002320757.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC30

Fln msg:

Fln protein: MDWEESTEGNVVGESNKKSVISSEQMDVEAYGSLYSGRTKITRLIFIADHCGNESMRVEALRMAYDEIKKGDNTQLFKEVAHKIGGKLGSDYSLDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQDQPVVVAKLKCAAGLAHLESKKYKLAARKFVETNFDLGNNYTEVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISRSSRRM*

Protein Length: 435

Fln nts: ATGGGTAATCATTGAGGGAATGAAGTAACTATCTTGATACCCATGAAATGAACTGAAACTTCAAGGATTTTGTTTGGTGGAAGTGTTTCACTCAGTGGCGGGGAAGTCGCTCGATATAAGTGGAAGTAGTAGCGGAAAGAGGAACGCTCAATTGATTCAACGGAAGCATAGAAAGCGGGGAGAGCAAACAGAGGCAAACAAAGGGAGAACAGAATTGATTTGGAATTGAAATTGGGTGAAG_-_ATGGATTGGGAAGAAAGCACGGAGGGGAACGTTGTGGGTGAGAGTAACAAGAAGAGTGTAATCAGCAGCGAGCAGATGGACGTGGAGGCTTATGGCTCTCTGTACAGCGGGAGGACAAAGATAACGCGTTTAATCTTCATCGCTGACCACTGCGGCAATGAGAGCATGAGGGTGGAGGCCCTGCGGATGGCCTACGATGAGATCAAGAAGGGCGACAACACCCAACTCTTCAAAGAGGTCGCCCACAAGATCGGTGGGAAGTTGGGTTCTGATTACTCCCTCGACCAAGACTGGATTGACTCAGTCGAACGCCGGGCTGAACAGCGCAAAGACAAGCTCGAGAATGAGCTAAATGGCTACAAGACAAATCTAATAAAGGAAAGCATTCGAATGGGATACAATGATTTCGGGGACTTCTACTATGCACATGGGTTGCTTGCAGACGCCTTCAAGAATTATGTCCGAACGCGTGACTACTGCACCACTTCGAAGCACATTATCCAAATGTGTTTGAATGTGATTCTGGTCAGCATTGAGATGGGTCAATTCATGCACGTTTCCAGTTATGTGACCAAGGCTGAACAAACCCCTGATGTCCAGGATCAACCTGTTGTGGTTGCCAAGCTAAAATGTGCTGCAGGTCTAGCTCACCTCGAAAGCAAGAAATACAAGCTAGCTGCTCGCAAGTTTGTTGAGACAAACTTTGACCTAGGGAACAACTATACAGAAGTTATTGCTCCGCAGGATGTTGCAACTTATGGAGGACTTTGTGCACTTGCGTCCTTTGATAGATCAGAACTTAAGAATAAAGTTATAGACAATATCAATTTTCGAAATTTCTTGGAACTAGTGCCTGAAGTAAGGGAACTTATTCATGACTTCTATGCAAGCCGATATGCTTCATGCATAGAGTATCTGCAGAATCTCAAGGCAAACCTACTGCTTGATATACATCTACATGATCACGTGGAAACACTGTATGATCAGATTCGGCACAAAGCCCTTATCCAGTATACAACTCCTTTCATATCTGTTGATCTTCGTACGATGGCAAATGCATTCATGACAAATGTGGCTGGGCTTGAAAAGGAGCTTGAAGCTTTGATTATGGATAATCAAATTCAGGCACGCATCGATTCACATAACAAGATCTTATATGCTCGCCATGCTGATCAACGTAATACAACATTTCAGCGGGTTCTCCAGACTGGGGTGGAATTTGATAGGGATGCACGAGCAATGATGTTGCGGGCCAATATCATGAGGCATGATTTTATCTCAAGATCATCCAGGAGGATGTGA___CTTGGCATGATTATTTTTTGCAAATTAATATTCTGTTGCATTTGACGATCTATACAAGCTTTGGGAATTCTGTAAATGTTGCAGGAATTGTTCTGATTTTTTAGTCTAAGAAATCTGTGTAAACATGCTTGATTGTGATCAATACGTTGGCAATTAGTGTTTTTTTTCTCCATTGCACCATTTATGTGGAGGTGCTATATATACTGTTTATAGCTTTTAAAGTTTTAATTTACCCCATATATTGAAATTAG

Fln Alignment:

AllPine_a_c2006___MDWEESTEGNVVGESNKKSVISSEQMDVEAYGSLYSGRTKITRLIFIADHCGNESMRVEALRMAYDEIKKGDNTQLFKEVAHKIGGKLGSDYSLDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTXXXXXXXXXXAKLKCAAGLAHLESKKYKLAARKFVETNFDLGNNYTEVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLRTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISRSSRRM
D5AC30_______________MDWEESTEGNVVGEGNKKSVISSEQMDVEAYGSLYSGRTKIMRLIFIADHCGNESMRMEALRMAYDEIKKGDNTQLFKEVTHKIGGKLGSDYALDQDWIDSVERRAEQRKDKLENELNGYKTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIQMCLNVILVSIEMGQFMHVSSYVTKAEQTPDVQEQVVVVAKLKCAAGLAHLENKKYKLAARKFVETNFDLGNNYTDVIAPQDVATYGGLCALASFDRSELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCIEYLQNLKANLLLDIHLHDHVETLYDQIRHKALIQYTTPFISVDLHTMANAFMTNVAGLEKELEALIMDNQIQARIDSHNKILYARHADQRNTTFQRVLQTGVEFDRDARAMMLRANIMRHDFISKSSRRM

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
104	33		66		0.997457
153	87		12		0.992554
234		16		83	0.999991
827	75		16		0.99999
1433		10		90	0.90298
1521		87	12		0.992554
1522	87	12			0.992554
1525	87			12	0.992554
1529		12		87	0.992554
1538	81		18		0.999994
1551	81			18	0.999994
1555			90	10	0.90298
1556	90	10			0.90298
1557		90	10		0.90298
1558			10	90	0.90298
1573		25		50	0.995534
1574	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain