SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93591

Length: 1416 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93591

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Strong similarity to F22O13.22 gi\|3063460 myosin homolog from A. thaliana BAC gb\|AC003981 [Arabidopsis thaliana]	-	-	0.0	72%
FL-Next	tr=Uncharacterized protein; Zea mays (Maize).	-	-	0.0	74%
Sma3	Myosin XI, putative	-	-	2.423e-19	-

Source	Gene names
Sma3	41C02.1; At1g17580; At2g20290; At2g31900; At2g33240; At4g28710; At4g33200; At5g20470; At5g20490; At5g43900; CHLREDRAFT_185104; F16A16.180; F20D22.7; GSVIVT00003703001; GSVIVT00007440001; GSVIVT00009562001; GSVIVT00009570001; GSVIVT00016505001; GSVIVT00020

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	myosin complex	GO:0016459	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	motor activity	GO:0003774	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	DNA topoisomerase type I activity	GO:0003917	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	actin filament binding	GO:0051015	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-
Sma3	DNA unwinding involved in replication	GO:0006268	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	actin filament-based movement	GO:0030048	Biological Process	-
Sma3	keratinization	GO:0031424	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ribosomal protein S7	IPR000235	-	-
Sma3	Involucrin repeat	IPR000354	-	-
Sma3	DNA topoisomerase, type IA	IPR000380	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA topoisomerase, type IA, domain 2	IPR003601	-	-
Sma3	HAMP linker domain	IPR003660	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3		IPR006154	-	-
Sma3	Toprim domain	IPR006171	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA topoisomerase, type IA, central	IPR013497	-	-
Sma3	DNA topoisomerase, type IA, central region, subdomain 3	IPR013826	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G54560.1	XIE, ATXIE Myosin family protein with Dil domain chr1:20371649-20379745 REVERSE LENGTH=1529	75%
RefSeq	Arabidopsis thaliana	NP_175858.1	Myosin family protein with Dil domain [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002319092.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: B4FGX5

Fln msg: atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning,

Fln protein: IIRDNLKKEISVLLGLCIQAPRTPRASAVKISRSQANANTQQASNNHWQSIIKSLTNLLQTMRGNYVPSILVRKVFTQTFAYINVQLFNSLLLRRECCSFSNGEYVKAGLAELELWCCEAKEEYAGSAWDALKHIRQAVGFLVIHQKPKKYLDEIAHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVIASMKMLMAEDSNDAHGNSFLLDDDLSIPFSVDDISKSMQETDLSDINPPSQLLENSAFHFLLPCTL*

Protein Length: 258

Fln nts: ATTATCCGTGACAATCTTAAGAAGGAAATATCTGTGTTGCTTGGCCTATGTATCCAGGCCCCAAGAACACCAAGAGCAAGCGCAGTTAAGATATCTCGATCCCAAGCAAATGCAAACACACAGCAAGCATCTAACAATCATTGGCAAAGCATTATCAAGAGCCTAACCAATCTTCTCCAAACTATGCGTGGAAATTATGTCCCATCTATTCTTGTTCGCAAGGTATTTACCCAGACATTTGCGTACATCAATGTACAGCTTTTCAACAGCCTCCTTTTACGGCGTGAATGCTGCTCATTTAGCAATGGAGAATATGTAAAAGCAGGGTTGGCTGAACTAGAACTTTGGTGCTGTGAAGCAAAAGAAGAGTATGCAGGCTCAGCCTGGGATGCACTCAAGCATATTAGACAAGCAGTGGGATTTTTGGTTATACATCAAAAGCCAAAGAAATATTTGGATGAAATTGCCCACGATCTCTGTCCGGTTTTAAGCATACAACAATTGTATAGAATCAGTACCATGTATTGGGACGATAAATATGGCACACACAGTGTGTCTCCAGATGTTATTGCAAGCATGAAAATGTTGATGGCAGAAGATTCAAACGATGCTCATGGAAATTCGTTCTTGTTGGATGACGACTTGAGTATACCATTCTCTGTGGATGACATCTCAAAGTCTATGCAAGAAACAGATTTGTCAGATATCAATCCACCGTCTCAGCTTCTTGAGAATTCAGCTTTTCATTTCTTGTTGCCATGTACTCTGTAA___TACAGAAGGCTACATTTTCTATTATTTTCATCTCTCAATCAATGGCGTTATCAGCTCATGTGCAGCTATTCCCTTGCAACATACAATTGGATTTTTATCCAGATCTTGTCTCAGAGCAGTAGAGTACATGACTGAGGAGAATAGTTGCACCCACTCCGCCTCCCCTCTTCGACCCCACCCAATTTGTTTTGTAATTTTATTATTGTAGAGAATACCATTTTTCAGTGATTTTTTGGTTTCGGATTGTAGCTTCTCCCTTGAAGGACTTATTTATTGTGTAGTCCCTAAGGGCAAATTGCCAAGAAGCTGTCATTACAGAAGATTATTCTTCTGAGGTCAACATTGCTTATCTGTGGAGATTTCTACTCATTTGATAAGCTTAGGGTTGCTTCTATTGAGATGCAGCTTAATCTGTGCTACATTCAAGATGATGAAGTGATCACAAAGGAAAATCCTTTGTTGTGGTGTGCTGCCATCTAAGGATTGGGCATGTAGTTAGATTCAATCTTAGCATTCTTTTTAGTTGCAGATATGTATACTTTTCATGTAAAACTGCCGGGAGTTACCATTGAACTCCCCAGAATGTAATATGTTTCTATAGTAGTACAGATGTTCTTTAGTAAAGTACAAATGAGTTCATATTTG

Fln Alignment:

AllPine_a_c1935___IIRDNLKKEISVLLGLCIQAPRTPRASAVKIXXXXXXXXXXXXXXXHWQSIIKSLTNLLQTMRGNYVPSILVRKVFTQTFAYINVQLFNSLLLRRECCSFSNGEYVKAGLAELELWCCEAKEEYAGSAWDALKHIRQAVGFLVIHQKPKKYLDEIAHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVIASMKMLMAEDSNDAHGNSFLLDDDLSIPFSVDDISKSMQETDLSDINPPSQLLENSAFHFL
B4FGX5_______________MIRDNLKKEISPLLGLCIQAPRTSRASLIKGSRSQANALAQQTLIAHWQSIVKILTNYLNVLKANYVPSVLISKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEQWCIYATEEYAGSSWEELKHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDDKYGTHTVSSDVISSMRVMMTEDSNNAVSSSFLLDDDSSIPFSVDDISKSMTEIEVTDVDMPPLIRENSGFTFL

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
748	8			33	1.0
762	14			14	0.984337
854	11			88	0.923564
855		88		11	0.923564
856		88	11		0.923564
857		88	11		0.923564
858			11	77	0.968132
873			11	88	0.991528
876	88		11		0.991528
951		75	25		0.996478
954			25	75	0.996473
957		66	33		0.999994
962		66		33	0.997464
963		66	33		0.997464
967		66	33		0.997476
968		66		33	0.997476
969	66	33			0.997476
971		33		66	0.997452
973		33		66	0.997453
974	20		80		0.995493
978		14		85	0.993533
979	14		85		0.993533
1076			11	88	0.923564
1077	88			11	0.923564
1078	88	11			0.923564
1080			88	11	0.923564
1084	88	11			0.923565
1085	88	11			0.923567
1090		88		11	0.991528
1091	88		11		0.923564
1092	88			11	0.923565
1093		11	88		0.991528
1095	88	11			0.991528
1096			88	11	0.991528
1151	10			90	0.903229
1152		10		90	0.903229
1153		10		90	0.903229
1157	10	90			0.903017
1158			10	90	0.903076
1160	90			10	0.903229
1162	10			90	0.903386
1164		11	88		0.923564
1166	11			88	0.923564
1168	88			11	0.923564
1170	11	88			0.923564
1171			11	88	0.923564
1273			83	16	0.994512
1278			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain