SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93578

Length: 1385 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93578

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoribosylglycinamide formyltransferase, chloroplastic n=1 Tax=Vigna unguiculata RepID=PUR3_VIGUN	-	-	0.0	64%
FL-Next	sp=Phosphoribosylglycinamide formyltransferase, chloroplastic; Vigna unguiculata (Cowpea).	-	-	0.0	64%
Sma3	Phosphoribosylglycinamide formyltransferase, chloroplastic	-	-	6.31e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoribosylglycinamide formyltransferase.	EC:2.1.2.2	-	2.521e-28	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	2.521e-28	%
Sma3	One carbon pool by folate	00670	2.521e-28	%
Sma3	Metabolic pathways	01100	2.521e-28	%
Sma3	Biosynthesis of secondary metabolites	01110	2.521e-28	%

Source	Gene names
Sma3	At1g31220; CHLREDRAFT_117678; F28K20.18; GART; GSVIVT00011727001; MICPUCDRAFT_51596; MICPUN_55714; OJ1345_D02.7; OJ1653_D06.4; OSTLU_6266; Os05g0270800; Os08g0500900; OsI_19244; OsI_29770; OsJ_17856; OsJ_21202; OsJ_27836; P0577H07.8; PHYPADRAFT_139540; PO

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	phosphoribosylglycinamide formyltransferase activity	GO:0004644	Molecular Function	-
Sma3	hydroxymethyl-, formyl- and related transferase activity	GO:0016742	Molecular Function	-
Sma3	purine nucleotide biosynthetic process	GO:0006164	Biological Process	-
Sma3	'de novo' IMP biosynthetic process	GO:0006189	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribosylglycinamide formyltransferase, active site	IPR001555	-	-
Sma3	Formyl transferase, N-terminal	IPR002376	-	-
Sma3	Phosphoribosylglycinamide formyltransferase	IPR004607	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31220.1	Formyl transferase chr1:11157064-11158408 FORWARD LENGTH=292	61%
RefSeq	Arabidopsis thaliana	NP_174407.1	phosphoribosylglycinamide formyltransferase [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002334132.1	glycinamide ribonucleotide transformylase [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P52423

Fln msg:

Fln protein: MGIYRRDLGCHCFSMASLLLPPSPCCWSSAGILSSQQSTHSSVTLPPSPSNAVRSQLTSFGTPTLSIFRAPPNRLYLKCPWLAIVRAVECRALGATKDAEPKNENPQRKDVGSGRKKVAVFVSGGGSNFKALHQATLRNDIPGDIVVLVTDKPRCRGCDYARENNIPIVIFPKSISAPSGQSSMDLITTLRKFEINFLLLAGYLKLLPIELIQAFPRSILNIHPSLLPAFGGKGYYGMNVHKAVIASGARFSGPTVHFVDEKYDTGRILAQRVVPVLANDTAEDLAARVLQEEHVIYVEAAAALCDGRIHWREDEVPIIRKSWDIEEYY*

Protein Length: 331

Fln nts: _-_ATGGGGATTTATCGTCGTGACCTTGGCTGTCACTGTTTCTCAATGGCGTCTTTGTTGCTTCCGCCCTCTCCTTGTTGTTGGTCATCTGCAGGGATTTTATCATCACAACAATCTACACACTCGAGCGTTACACTGCCACCATCACCATCAAATGCTGTTCGTTCACAACTCACGAGCTTTGGAACCCCTACGCTCTCCATTTTTCGAGCGCCACCCAACAGATTATATTTGAAATGCCCTTGGCTAGCTATAGTCAGGGCCGTTGAATGCAGAGCATTGGGAGCCACAAAGGACGCGGAGCCTAAGAACGAGAATCCGCAGAGAAAAGATGTTGGGAGTGGAAGGAAGAAGGTGGCCGTTTTTGTTTCCGGTGGTGGTTCGAATTTCAAGGCTCTGCACCAAGCTACTCTCAGAAATGACATCCCCGGCGATATTGTTGTTCTCGTCACCGATAAGCCTAGATGTAGAGGCTGTGATTATGCAAGGGAAAACAATATTCCAATTGTCATCTTTCCCAAGAGTATCTCTGCACCTTCTGGACAATCTTCGATGGATCTTATAACCACTCTCAGGAAGTTTGAGATCAACTTTCTTCTACTAGCTGGTTACCTGAAACTGTTACCTATTGAACTTATTCAAGCATTTCCAAGATCAATTTTGAACATTCATCCATCTCTTCTTCCTGCTTTTGGAGGCAAAGGTTATTATGGGATGAACGTGCATAAAGCTGTTATTGCATCTGGAGCCAGATTTTCAGGCCCTACAGTCCACTTTGTAGATGAAAAGTATGATACTGGTAGAATCCTCGCTCAACGAGTTGTTCCTGTTCTAGCAAATGACACAGCAGAGGACTTGGCTGCAAGGGTCTTGCAAGAGGAGCATGTAATATATGTCGAGGCTGCTGCTGCTTTATGTGATGGCAGAATTCATTGGAGGGAAGACGAAGTGCCTATAATTCGAAAATCTTGGGATATCGAGGAATATTACTGA___CCCTTTTACTAATTTTGTTGCGAGGATTTTTCTGCAAGCAACAAGTATATATTTCGACTATAGAAGCTTGATGGTTCACAGAGCACTTGGCATATGTGGAGGTTGTCGCTGGCTTATGTGAAGGTCTAATCATTAGAGTTAATATGAGTACCTATTCTAATATGAATATCATAGGTACTTCCTTTGTCTTGTTTGTCTACGACTATCACAATTTGTGAATGTAGTTCATACGTCAATTTTTTCGATGGTATAAACCTTCCTCTCTTATAAGGGGCATGTGAATCTACAGGGGAAAACATTTTTGTTTACATTGTTTCCTTTAGACAAGTTTATTTAACTTTTATAGATTGTATGCAAGTTTATTTAATTTATGAGGTTCTAACATTTGGTTTGCT

Fln Alignment:

AllPine_a_c1551___ATKDAEPKNENPQRKDVGSGRKKVAVFVSGGGSNFKALHQATLRNDIPGDIVVLVTDKPRCRGCDYARENNIPIVIFPKSISAPSGQSSMDLITTLRKFEINFLLLAGYLKLLPIELIQAFPRSILNIHPSLLPAFGGKGYYGMNVHKAVIASGARFSGPTVHFVDEKYDTGRILAQRVVPVLANDTAEDLAARVLQEEHVIYVEAAAALCDGRIHWREDEVPIIRKSWDIEEY
P52423_______________SSSTAEPEEDHEVRAQVTVRRKKLAVFVSGGGSNFRSIHEASKKGSLHGDVTVLVTNKSECGGAQYARNNGIPVILFPKAKDEPKGLSPCDLVDTLRKFEVDFVLLAGYLKLIPVELIRAFERSIFNIHPSLLPAFGGKGYYGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTAEELAARVLNEEHQLYVEVVEALCEERIVWRKDGVPLIQSRENPNEF

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
51		75		25	1.0
127		87		12	0.992554
328	83			16	0.999991
382	12		87		0.992554
408	12	87			0.992554
446	11		88		0.991528
447	11			88	0.991528
448		88		11	0.991528
449	88		11		0.991528
450		88		11	0.991528
471	12		87		0.992554
573		11	88		0.991528
597		14		85	0.993533
1107		50		50	1.0
1108	25		75		0.996473
1110	25			75	0.996473
1122	50	50			1.0
1142	50	50			1.0
1200		60		40	1.0
1233			60	40	1.0
1237	50		50		1.0
1241			50	50	1.0
1263	40	60			1.0
1265		60		40	1.0
1318		66		33	0.997452
1319	20	80			0.995493
1320	20			80	0.995493
1322			20	80	0.995493
1323	80			20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
898	909	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain