SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93569

Length: 1595 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene93569 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative 1,3-beta glucanase [Oryza sativa Japonica Group] dbj\|BAD10703.1\| putative 1,3-beta glucanase [Oryza sativa Japonica Group]	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Putative Glucan 1,3-beta-glucosidase	-	-	9.17e-09	-

Source	Gene names
Sma3	GSVIVT00011447001; GSVIVT00011902001; GSVIVT00011904001; GSVIVT00015266001; LOC_Os10g22520; LOC_Os10g22570; OJ1003C07.1; OJ1111_H02.28; OJ1208D02.11; OJ1208D02.5; OJA1208D02.1; OSJNBa0037H06.1; Os05g0244500; Os08g0484100; Os10g0370500; Os10g0370800; OsI_1

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ	IPR013114	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002310872.1	predicted protein, partial [Populus trichocarpa]	0.0	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKR6

Fln msg: your sequence is shorter than subject: 461 - 511

Fln protein: CNTYVSAENGGGQNAVVNRDNASTWETFKMWRVSDGMYQLRVFSGQFLTAENGGGGNVSAEADSPADWETFHIIRHHKHPNRVHIRVSNGMYMQAQSQEQLTADYQGDPGWHDNSATFQMIIVANDLHGDYQLANGYGRDKAKKVYHRHRSSFITDKDFKFLSRNGINTVRIPVGWWIAYDPNPPAPFVGGSLQSLDNAFKWADHYGLKVIVDLHAAPGSQNGMEHSASRDGSADWSNSSDHISQSLTVIDFLVSRYSNNSMLLGIELLNEPLATTVPVDVLASYYSNGYQTVRKYSATTYVIMCQRIGNADPHELYQINDAFSNIVVDVHYYNLFDDYFDNKTAQDNIDFILKNREPQVEALNSTNGPLIFVGEWTNEWKVQGASRSEYQQFGDAQLQAYEKASFGWSYWTLKNEEKHWDFEWNIKHNYLRLGNSRATSNKSISWRIYAFLLIFGCIYV*

Protein Length: 462

Fln nts: AATGTAACACGTACGTGAGTGCAGAGAATGGGGGTGGGCAGAATGCTGTTGTTAATAGGGACAATGCTTCTACCTGGGAGACTTTCAAGATGTGGAGAGTCTCAGATGGCATGTATCAACTTAGAGTGTTTAGTGGTCAATTCCTAACAGCAGAAAATGGAGGAGGAGGCAACGTGTCTGCAGAAGCAGATTCTCCTGCTGATTGGGAAACATTCCACATAATTAGGCACCATAAACATCCTAACCGAGTGCATATCAGGGTGTCCAATGGAATGTATATGCAGGCACAATCCCAGGAGCAGCTTACAGCAGATTACCAAGGGGATCCTGGGTGGCATGACAATTCAGCAACCTTCCAGATGATTATAGTTGCCAATGATTTGCATGGAGATTACCAGCTTGCAAATGGATATGGCCGTGATAAAGCAAAGAAAGTTTACCATAGACATAGAAGCAGCTTTATTACAGATAAGGATTTCAAATTCCTCTCCAGGAATGGTATAAATACCGTTAGAATTCCTGTTGGGTGGTGGATTGCATATGATCCGAATCCACCAGCACCTTTCGTAGGAGGATCTTTACAATCTCTCGATAATGCTTTTAAATGGGCAGATCATTATGGTTTAAAGGTTATTGTTGACCTCCATGCGGCACCTGGTTCACAAAATGGAATGGAGCATAGTGCCAGCAGAGATGGATCTGCTGACTGGTCTAACTCTTCAGACCATATTTCCCAAAGTTTAACTGTTATTGATTTCCTTGTTTCGAGATATAGTAACAATAGTATGCTCTTAGGTATTGAATTGCTGAATGAACCTCTAGCAACAACTGTTCCTGTGGATGTTTTGGCTTCCTATTATTCAAATGGCTATCAAACTGTGCGGAAGTACTCTGCCACAACATATGTTATCATGTGCCAGAGGATTGGAAATGCTGATCCACATGAGCTGTATCAAATAAATGATGCATTTTCAAATATCGTTGTTGATGTTCACTACTATAATCTTTTTGATGATTATTTTGATAACAAGACTGCCCAAGATAATATTGACTTCATCTTGAAGAACAGGGAACCCCAAGTGGAAGCTCTAAACAGCACAAATGGTCCTCTCATATTTGTCGGTGAATGGACAAATGAGTGGAAGGTGCAAGGAGCTTCAAGGTCGGAATATCAACAGTTTGGTGATGCACAATTACAAGCTTATGAAAAGGCTTCATTTGGTTGGTCATATTGGACTCTAAAGAACGAAGAGAAGCACTGGGATTTTGAGTGGAATATCAAGCACAACTACCTTAGATTAGGTAATTCGAGGGCAACATCAAACAAGAGTATATCTTGGAGAATATATGCCTTTTTGTTGATCTTTGGGTGTATTTATGTATGA___GACTTGAGTAGCCGGGCAATCTGACACTTTAATGCTGCTAAAAAATAGCTGGTGGTTCTTTCTGAAATAGATTTGACATATATGACATTACAATTCCTACATTTTAATCCACTGAAGGGCAACAGTGATTGGTACTTGCAGTGATTCCATGATTCAATTCTTGCTCTTTTTCCAAGAAGACAATAAGAAATTAATAATACAAACCTACCT

Fln Alignment:

AllPine_a_c1330___YVSAENGGGQNAVVNRDNASTWETFKMWRVSDGMYQLRVFSGQFLTAENGGGGNVSAEADSPADWETFHIIRHHKHPNRVHIRVSNGMYMQAQSQEQLTADYQGDPGWHD-NSATFQMIIVAND--LHGDYQLANGYGRDKAKKVYHRHRSSFITDKDFKFLSRNGINTVRIPVGWWIAYDPNPPAPFVGGSLQSLDNAFKWADHYGLKVIVDLHAAPGSQNGMEHSASRDGSADWSNSSDHISQSLTVIDFLVSRYSNNSMLLGIELLNEPLATT------VPVDVLASYYSNGYQTVRKYSATTYVIMCQRIGNADPHELYQINDAFSNIVVDVHYYNLFDD-YFDNKTAQDNIDFILKNREPQVEALNSTNGPLIFVGEWTNEWKVQGASRSEYQQFGDAQLQAYEKASFGWSYWTLKNEEKHWDFEWNIKHNYLRL
B8LKR6_______________FVSAEDGGGKNLVVNRGSASGWETFRVWRVKDGTYQFRAFNKQFVRAVNAGGGIVDATADTPREWETFQIIRNPSNKNQVHIKAYNGMYIQAQSQDQLTADFQGEPGWNDGNAATFEMNIVTGDYGIGGEYQLTNGLGPDKAPQVMNDHWNSFITESDFEFMSSKGITAVRIPVGWWIASDPNPPAPFVGGSLKALDNAFTWAKNHNIGVIVDLHAVPGSQNGDAHSGTRDGYLEWPNSQDNIDKSISVIDFLAGRYASNSALLGIELLNEPRASTDPNAPGVPLDTLKTYYKRGYDTIRKHSPSAYVIMCNRIGPADAKELFDINNGLTRTVVDVHYYNLYDDSTFKSMSVQQNIDYINNNRAQILQSLTSANGPLIYVGEWTNEWEYQGASMSDYQRFGKAQLQVYGTATFGWSYWTLKNVQNHWSFEWMVQNNYLQL

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
568	20		80		0.995493
570		80	20		0.995493
615	60		40		1.0
660		12		87	0.992554
665	11	88			0.923564
669		88		11	0.923564
684	10		90		0.90298
685	10		90		0.90298
686		90		10	0.90298
687	90		10		0.90298
688		90		10	0.90298
757	87		12		0.992554
853	85			14	0.993533
916	16		83		0.994512
920			83	16	0.994512
1001	25			75	0.996473
1003			25	75	0.996473
1004	75			25	0.996473
1077		75		25	0.996473
1078		75		25	0.996473
1177	33			66	0.997454
1178	33			66	0.997453
1182		66		33	0.997452
1417	33		66		0.997452
1418			66	33	0.997452
1419	66		33		0.997452
1420			66	33	0.997452
1489		20		80	0.995493
1524	20			80	0.995493
1531	75	25			0.996473
1533			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain