SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93547

Length: 1327 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93547

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-amylase [Ipomoea nil]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	alpha-amylase activity	GO:0004556	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha-amylase, C-terminal beta-sheet	IPR012850	-	-
Sma3	Alpha-amylase, plant	IPR013775	-	-
Sma3	Glycoside hydrolase, family 13	IPR006046	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G25000.1	ATAMY1, AMY1 alpha-amylase-like chr4:12852109-12853825 REVERSE LENGTH=423	56%
RefSeq	Arabidopsis thaliana	NP_567714.1	alpha-amylase [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002301187.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUX3

Fln msg: your sequence is shorter than subject: 363 - 448

Fln protein: ELGYMPEKLYDLESSKYGNEQELRGAVNAFHQKGIGCVGDIVINHRCGTKQDDKGYWCVFEGGTADGRLDWGPWAVTVPDKPYPCGSGNADTGADYVAAPDVDHTNPKIQQDLWEWMNWLKSNVGFDGWRFDFAKGYAGNLLGAYIQNTSPKFAIGEVWDNMTYGSDGRLAYDQNAHRQRLVDWVHSTGDRAAAFDFTTKGILQEAVKSSELWRLKDSNGKPAGMIGVLPQKAVTFIDNHDTGSTQNMWPFPSDKLLQGYAYILTHPSIPTIFYDHFVDGNLKSEIQNLMAIRKRNNINANSNCRIITAEGDLYMAAIDENIVMKIGSRYDVGNLAPPAPQFRIVASGNDYCVWERNSSSAE*

Protein Length: 364

Fln nts: GTGAATTAGGTTATATGCCAGAGAAGCTTTATGATTTGGAGTCATCCAAGTACGGGAACGAACAAGAACTAAGGGGTGCCGTGAATGCGTTCCACCAAAAGGGAATTGGGTGTGTGGGCGACATCGTCATAAACCATCGGTGCGGGACGAAGCAGGACGATAAAGGGTATTGGTGCGTGTTCGAGGGCGGTACAGCGGACGGGCGTCTGGACTGGGGACCCTGGGCGGTCACTGTGCCCGACAAACCATACCCTTGCGGTTCTGGCAACGCCGATACAGGCGCCGACTACGTTGCAGCCCCGGACGTGGACCACACCAATCCGAAGATACAGCAAGATTTGTGGGAGTGGATGAATTGGCTCAAGTCCAATGTGGGGTTTGACGGGTGGAGGTTCGACTTCGCCAAGGGCTACGCCGGAAATCTGTTGGGCGCCTATATTCAAAACACCAGCCCCAAATTCGCAATTGGGGAGGTGTGGGACAATATGACTTATGGCTCCGACGGCCGCCTTGCCTACGACCAGAATGCCCATCGCCAGAGACTGGTCGACTGGGTGCACTCCACGGGTGACCGAGCAGCGGCCTTTGATTTTACTACCAAAGGGATTCTGCAGGAGGCGGTGAAGTCCAGCGAGCTGTGGCGCCTAAAGGATTCCAATGGGAAACCAGCTGGCATGATCGGGGTTTTACCCCAGAAGGCGGTCACCTTTATAGACAATCACGACACCGGGTCCACCCAGAACATGTGGCCTTTCCCCTCCGATAAACTGCTGCAGGGCTACGCCTATATTCTCACCCACCCCAGCATTCCCACCATTTTTTATGACCATTTCGTGGACGGTAATTTGAAAAGCGAAATTCAAAACCTGATGGCCATACGCAAGAGAAATAACATAAACGCTAACAGCAATTGCAGAATTATAACTGCGGAGGGTGACCTGTACATGGCTGCTATTGACGAAAATATTGTGATGAAGATCGGGTCCAGGTATGATGTGGGAAACCTGGCCCCGCCTGCTCCACAATTCCGCATCGTCGCTTCTGGGAACGACTATTGCGTGTGGGAAAGGAACAGCTCCTCCGCTGAATGA___GCGCCATCAGTAGCCCAGCAGTTTTGATGGATTTAACTGTTTTATATAATCTCTTAGGTTACATTTCCATATGCCGCTCTTAACCGGTTTCTCAGATTGTATGTACATAACTGTATATGGTCCCTTTATTGGGATTGGCTGAATAAGCAATCTGGATTTTGTGGGTTTTATGATGATTTTAGCAAATTGCTATAATGTAAATGGTCCGTCTAATTAATACAAATAATTCATTTGCT

Fln Alignment:

AllPine_a_c660___GYMPEKLYDLESSKYGNEQELRGAVNAFHQKGIGCVGDIVINHRCGTKQDDKGYWCVFEGGTADGRLDWGPWAVTVPDKPYPCGSGNADTGADYVAAPDVDHTNPKIQQDLWEWMNWLKSNVGFDGWRFDFAKGYAGNLLGAYIQNTSPKFAIGEVWDNMTYGSDGRLAYDQNAHRQRLVDWVHSTGDRAAAFDFTTKGILQEAVKSSELWRLKDSNGKPAGMIGVLPQKAVTFIDNHDTGSTQNMWPFPSDKLLQGYAYILTHPSIPTIFYDHFVDGNLKSEIQNLMAIRKRNNINANSNCRIITAEGDLYMAAIDENIVMKIGSRYDVGNLAPPAPQFRIVASGNDYCVWERNSS
A9NUX3_______________GYLPQRLYDLNSSKYGSEQELRNAVDAFHQKGIGCVGDMVINHRSGTKQDDKGMWCVFEGGKGDGRLDWGPWAVTVNDKPFACGSGQADTGGDYAAAPDIDHTNPKIQQDLSEWMNWLKSNVGFDGWRFDFAKGYAGNLLAVYLKNTSPKFAVGEVWDDMSY-SDGRLAYDQGAHRQRLVDWVHSTGDGAAAFDFTTKGILQEAVKSNELWRLKDSNGKPAGMIGVLPQKAVTFIDNHDTGSTQNIWPFPSDKLLQGYAYILTHPGIPTIFYDHFVDGNLKKEIQNLSAIRKRNNINANSNCRIITAESDLYMAAIDEKIVVKIGSRYDVGNLAPPSPEFRVVASGNGYCVWEKNSS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
808	40		60		1.0
837		60		40	1.0
870		71		28	1.0
942	87		12		0.992554
1155			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain