SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93543

Length: 1803 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93543

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin gamma-1 chain n=30 Tax=Embryophyta RepID=TBG1_ARATH	-	-	93%
FL-Next	sp=Tubulin gamma chain; Physcomitrella patens subsp. patens (Moss).	-	-	96%
Sma3	Tubulin gamma chain	-	-	-

Source	Gene names
Sma3	gtb1;

Source	GOs	Term	Type	Identity
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	microtubule-based process	GO:0007017	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Gamma tubulin	IPR002454	-	-
Sma3	Tubulin	IPR000217	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05620.1	TUBG2, ATGCP2, GCP2 gamma-tubulin complex protein 2 chr5:1679340-1681719 FORWARD LENGTH=474	94%
RefSeq	Arabidopsis thaliana	NP_196181.1	tubulin gamma-2 chain [Arabidopsis thaliana]	94%
RefSeq	Populus trichocarpa	XP_002320847.1	tubulin gamma-1 chain, at3g61650-like protein [Populus trichocarpa]	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9XFG3

Fln msg: Overlapping hits, possible frame ERROR between 240 and 234,

Fln protein: MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDxxxxQADDEHYIPRALLMDLEPRVINGIQNSEYRNLYNHENIFLSDHGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCISQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQSLVDEYKACESPDYIKWGMEDRNRTLTGDGSSTGTLDSRLAL*

Protein Length: 476

Fln nts: TCTCATCTCGTCGACAAGGACTAGGAGCAGAGGTCGAATCCTGTAATCCCCAACGGAGCGTAACTAACAGAGCAAGGAGGAATC_-_ATGCCTAGGGAGATAATCACCTTACAGGTGGGGCAATGTGGCAATCAGATCGGTATGGAGTTCTGGAAGCAGCTCTGCCTGGAGCACGGCATCAGCAAAGAAGGCATCCTCGAAGATTTCGCTACACAGGGAGGTGACAGGAAAGATxxxxxxxxxxxxCAAGCAGATGATGAGCATTACATTCCACGAGCTCTTTTGATGGATTTGGAGCCTCGAGTTATCAATGGAATTCAAAATAGTGAATATCGAAACCTTTACAACCATGAGAATATATTTCTTTCAGATCATGGTGGGGGAGCTGGAAATAATTGGGCGAGTGGATATCATCAGGGGGAACAGGTTGAAGAAGATATAATGGACATGATTGATAGAGAAGCAGATGGAAGTGACAGTCTTGAAGGCTTTGTTCTGTGCCATTCGATAGCTGGAGGAACTGGTTCAGGAATGGGCTCATATCTGTTGGAAGCTTTAAATGATCGATACAGCAAAAAACTAGTCCAGACATACAGCGTTTTTCCAAACCAGATGGAGACCAGTGATGTTGTTGTACAACCTTACAATTCTCTTTTGACTCTTAAGAGACTGACCTTGAATGCTGACTGTGTTGTGGTACTTGACAATACTGCTTTAAATAGAATTGCTGTGGATCGCCTCCACTTACCAAACCCAACATTTGCACAAACAAACTCCTTGGTGTCAACAGTAATGTCTGCCAGCACAACAACACTTCGCTACCCAGGGTATATGAATAATGATCTGGTTGGTTTGGTTGCCTCTTTGATACCAACACCAAGATGCCACTTTTTAATGACTGGGTACACACCCCTTACGGTGGAGCGTCAGGCTAATGCTATACGCAAGACAACTGTACTTGATGTGATGAGAAGGCTTTTGCAGGCAAAAAATATTATGGTTTCCTCTTATGCTCGTACTAAGGAAGCAAGTCAGGCAAAGTATATATCTATCCTGAACATTATTCAAGGGGAAGTGGATCCCACACAGGTTCATAAAAGCCTTCAGAGAATACGTGAAAGGAAACTGGCTAATTTTATTGAATGGGGACCTGCAAGTATCCAGGTTGCTTTATCAAGAAAATCGCCATATGTGCAAACTGCTCACAGGGTCAGTGGTCTTATGCTAGCAAGCCACACAAGCATTCGACATCTCTTTAGTAAGTGCATAAGCCAGTATGAGAAATTGAGGAAGAAGCAAGCCTTTCTGGACAACTATCGGAAGTTTCCTATGTTTGCTGACAACGATTTGTCTGAGTTTGATGAATCCCGAGAAATAGTCCAGAGCTTAGTTGATGAATACAAAGCATGTGAATCACCGGATTATATCAAGTGGGGCATGGAGGATCGGAATCGAACATTGACTGGTGATGGGAGTAGTACAGGAACTTTGGACTCAAGACTGGCATTGTGA___AAGTACTATGTATGCCTTTCATCCCTGTGAAATACTGGATTCAAACTTTAGTATCTACCATTTATCTTAGGTGGACTTAACTATTAAAGAAGGCACACTAACACATGTAAATTTTTTAATCATTGCAAGTTGAAAATTGATTTGCATTTGCTTAATGAATATCATGTAACTAGACCAGAGAGCAAAACAAGCTTGAATTCTATAGAAAGGTGTTCATTTCAAATTTTGACATCTGTATATTTTAAAGGAGGACTAACATTTTAGAACATAATAACAAATGACTACCTTATTGTTC

Fln Alignment:

AllPine_a_c469___MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVxxYQADDEHYIPRALLMDLEPRVINGIQNSEYRNLYNHENIFLSDHGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCISQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQSLVDEYKACESPDYIKWGMEDRNR
Q9XFG3_______________MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVxxYQADDEHYIPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTVERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCISQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQNLVDEYKACESADYIKWGMEDRGK

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
617	11		88		0.991528
634	11			88	0.991528
635		11		88	0.991528
636	11		88		0.991528
761	90			10	0.90298
769		90		10	0.90298
915		88		11	0.991528
1069		33		66	0.997452
1158	16		83		0.994512
1162			83	16	0.994512
1231		12		87	0.992554
1292			12	87	0.992554
1294	85		14		0.993533
1304	85		14		0.993533
1334		85		14	0.993533
1368		14		85	0.993533
1390	85		14		0.993533
1442	12		87		0.992554
1536			10	90	0.90298
1541		90	10		0.90298
1542		90		10	0.90298
1643		14		85	0.993533
1710	80		20		0.995493
1711	20		80		0.995493
1733		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain