SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93540

Length: 1705 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene93540

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ctp synthase, putative n=1 Tax=Ricinus communis RepID=B9RKV2_RICCO	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	CTP synthase	-	-	3.09e-34	-

Source	ECs	Term	Type	e value	Identity
Sma3	CTP synthase.	EC:6.3.4.2	-	1.309e-21	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		1.309e-21	%
Sma3	Metabolic pathways	01100		1.309e-21	%

Source	Gene names
Sma3	AT4g02120; AT4g20320; At1g30820; At2g34890; At3g12670; At4g02120; At4g20320; CHLREDRAFT_176554; F1C12.230; GSVIVT00002140001; GSVIVT00018223001; GSVIVT00021100001; GSVIVT00028076001; LOC_Os12g36950; MICPUCDRAFT_70230; MICPUN_55251; MtrDRAFT_AC155884g12v2;

Source	GOs	Term	Type	Identity
Sma3	CTP synthase activity	GO:0003883	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3		IPR000991	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	CTP synthase	IPR004468	-	-
Sma3	CTP synthase, N-terminal	IPR017456	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12670.1	emb2742 CTP synthase family protein chr3:4020351-4024086 REVERSE LENGTH=591	69%
RefSeq	Arabidopsis thaliana	NP_187873.1	CTP synthase [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002315098.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK6

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 378 - 445

Fln protein: S*SNLERVEPFKVNIAMVGKYTGLSDAYLSVLKALEHASIECSRKLLVEWVAASDLEDTVAKEAPDVHAAAWKSLMGADGVLVPGGFGDRGVQGKILAAKYAREKKIPYLGICLGMQIAVIEYARSVLGLVGANSTEFDPETSNPCVIFMPEGSKTHMGGTMRLGSRRTYFQSADCITAKLYQKAKADYVDERHRHRYEVNPDMVEKLEQEGLLFVGKDETDRRMQILELTGHPYFVGVQFHPEFKSRPGKASAVFLGLILAASCQLDSYLNNPGKQSNLSRSPHVDDSSRSPVSPGGNVFENGSVNGTDNGLVFENGSVNGTDNGLVFENGSVNGTDNGLVSNGVGNGIVNGPANGVTKRNPPPNCSNANGNGFHA*

Protein Length: 379

Fln nts: TCATGAAGCAATCTTGAAAGAGTTGAACCTTTCAAGGTCAATATTGCAATGGTGGGAAAATACACTGGCCTTTCTGATGCTTATCTTTCTGTTCTGAAGGCCCTTGAACATGCTTCTATAGAATGTTCGAGAAAATTGTTAGTGGAATGGGTTGCAGCATCTGACCTTGAAGACACAGTTGCAAAAGAGGCACCAGATGTTCATGCAGCTGCTTGGAAATCTCTCATGGGTGCAGATGGTGTTCTGGTTCCAGGTGGATTTGGTGATCGTGGTGTCCAAGGGAAAATACTTGCAGCAAAATATGCTCGAGAAAAGAAAATCCCATATCTTGGAATTTGCTTGGGAATGCAGATTGCTGTGATTGAGTATGCTCGTTCTGTTCTTGGATTGGTGGGGGCTAACAGCACAGAGTTTGACCCAGAAACTTCAAATCCCTGTGTTATTTTCATGCCTGAGGGTTCAAAAACCCATATGGGGGGTACCATGCGACTGGGTTCTAGGAGGACATATTTCCAGAGTGCGGATTGCATCACTGCAAAGTTATACCAAAAAGCTAAAGCTGATTATGTGGATGAGCGACATCGACATAGATATGAGGTTAACCCTGATATGGTTGAAAAGCTTGAACAGGAGGGGCTACTGTTTGTGGGCAAGGATGAAACCGATAGACGTATGCAGATACTGGAATTAACAGGCCATCCTTATTTTGTTGGAGTCCAGTTCCATCCAGAATTCAAGTCAAGACCTGGAAAAGCATCTGCAGTCTTCTTGGGCCTCATACTAGCAGCGTCATGTCAGCTTGATTCATATTTGAACAACCCTGGCAAACAGAGCAATTTGAGTCGGAGTCCTCATGTGGATGATAGTAGCAGAAGTCCTGTATCACCTGGAGGGAATGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCTTGTATCAAATGGTGTTGGAAATGGCATTGTGAATGGTCCTGCTAATGGTGTTACGAAAAGGAATCCACCTCCTAACTGCTCAAATGCGAATGGAAATGGCTTCCATGCCTAA___ATAAGAGTGAACCGATTGAGTTTGGATTGTAAAGTTTTGGTGCTTTAAGTTTGAGTCATTGTTAGCATCATTTTTTCTTTGATACTGAAATTAAGTGTTGCTTGCTCTCAAGCATTACAAAAGAGGTCCAAATCTACAATTTGCGGAACGTTCTGTACAGAAGATAGAGTGGGGTATCTGAGATGTAGAACTTACCTGTTGGATATGACCACAGAATATATTGTTACACTATCAGGCTACAGGGTACTGGAGAACAAATTGTGTTGTGTTCTTCCTGACTTTGACAGTTCTTTGTAGTGGCTGCTGCTGATTCATTGGTGAATGCTATTTATGGTTTTAAAAAATTTCAGGTTCCCACTATGTGGGAAGCACTGTTGTCATTCAACTGATGGCTCGGGACAAAGTTTGTCATATATTTTTAATGGGTTTATACTACGCCATAAAGATATTAAATTGAAACTTGTCAATAGCAGAACTTGGAAATACATCTCTACTATGTCACAATGAAATTGTTCAAGTAACAATTGACTACTCTTATTAAGACTTGCTGCTTCCTTTTTGGAAACACATG

Fln Alignment:

AllPine_a_c402___VNIAMVGKYTGLSDAYLSVLKALEHASIECSRKLLVEWVAASDLEDTVAKEAPDVHAAAWKSLMGADGVLVPGGFGDRGVQGKILAAKYAREKKIPYLGICLGMQIAVIEYARSVLGLVGANSTEFDPETSNPCVIFMPEGSKTHMGG
B8LLK6_______________IKIAMVGKYTGLSDSYLSVLKALLHACVACSLKLSVEWVAASDLEDEAAKERPDVYASAWKVLKGAAGVLVPGGFGDRGVQGKILAAKYARENRIPYLGICLGMQIAVIEFARSVLGLEGANSAEFDPETPHPCVIFMPEIRKCFLCG

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
387	25	75			0.996473
388	25			75	0.996473
398			25	75	0.996473
399			75	25	0.996474
413	20	80			0.995493
414	80			20	0.995493
460	20			80	0.995493
683	14		85		0.993533
687	85			14	0.993533
700		75		25	0.996473
753	66		33		1.0
978		83		16	0.994512
1096	85			14	0.994477
1134	14			85	0.994477
1136		85	14		0.994477
1137		85	14		0.994477
1138	85		14		0.994477
1202		10	90		0.991528
1203			10	90	0.991528
1204		90	10		0.991528
1319	10		90		0.991528
1468	75		25		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
897	1025	TGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCT TGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCT TGTGTTTGAAAATGGCAGTGTAAATGGCACTGATAATGGGCT TGT	129

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain