SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene93538

Length: 2796 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene93538
CGTCGTGACCTTGGATGGGGGGCATGGAAGTCATCGACGGTATGCAGCAAGATCGAACCAGGGGGGGTTTACCGTCCAATCTTAGTTTTTCACATCAAAATTTCCGCTGCGGCCATGTTCGTTGTTCGATTCTAGCGCAAAATTCGAATTCTTCTGCAGATTAACTCCGGAACAAGACTTTATTTGTCAGAACAGCCAAATATAACTGTGATTCGTCCCAATTTGGACAATTTTAGTGTTTTTTTGATCACTCTAGCTCGGGAATCGATTATCCGTCCGAAATAATACCGATTTTCTGGAAAGAAGCGGTCGCATATGGTCTTTGGAAAAGAGAAAGCGTTTGGATATCATGCATTAAGGCCTCGTATTTCTGTGTTCTATGATCAACGGTACTTGAAAATTGCTGGAAAATCAAGTGCAATTGCAAGTTCCATAAGCATTGTTAACCCCTTTAAAAACTTGATTCTTTTTGAATTGTCTAAATCAAATAAGTGTACAAATCCGCTTTCTGCATTGCAAGCCATTTGACACGGCAGAATGATGGGCTCTGAAAATGATGAAGCTCAGGAAGCTCACCTCTTCACCTCCACAGAAGCAATGGAAAGCCTGGTCTTAGATCAACCCCCGCAGACATATATATCGAGTAGCGATTACAGGAGCGTAATGTCATCTTATGCTGAAACACATTCATTGCCTCCTTCGGAAGACCCCTTGCAGTCGTCCTTTAAAGATTCACACCATAAGAGCTTCAAAGATGACTTCCCAGATGATTCTTTTGTGGAGCCTCCTTCATATGCAGATGTTGTGTTTACTCCCTTTGGGGAAGAATCCATTGTTGGAAATGGTAACGGCACGGCAAGGGAGACAGGGAACTCATTTTCGTCGCAATCGGCCTCATCAAGTTCAGAATATTTGAATATTGCAGTAGTCCAACCTCAGAAGGAGCAAGAAATTGCAAACTCTCTTGTTCCAGGGGGCAACTCATATGTGACATATCTCATTGTTACTCATACAAACATGTCTGAGTTTGGTGGTTCAGAGTTCGGTGTGAGGCGAAGATTTCGAGATGTGGTAACTTTGGCTGATAGGCTTGCAGAATCTTATCGGGGATTCTTTATTCCTCCCCGCCCGGACAAAAGTGTTGTTGAAAGCCAGGTTATGCATAAACAGGAGTTCATTGAGCAGCGACGAATAGCACTGGAGAAATATCTTTGCAGATTGGCTGGTCATCCAGTGATTAGGAAGAGCCTTGAATTGAGATTATTTCTTCAGGCTCAAGGAAAATTACCCTTACCAAGCACGACAGACATGGCTTCACGAATGCTTGATGGTGCTGTGAAACTACCTAAGCAACTATTTGGAGAGGGCAATGCCGCATGCACAGCTCAAGATGTTGCTCAACCAGCAAAGGGAGGAAGGGATCTGATTAGAATGTTCAAGGAGCTAAAGCAGTCCGTCACAATCGACTGGGGAGGAGTAAAGCCTCTTTTTGTTGAGGAAGACAAGGATTTTTTGGAAAAGAAAGAAAAATTACAAGATCTAGAGCATGAGCTAAGCGATGCTTCTCAGCAGGCTGAGGTACTTGTTAAAGCGCAGCAGGAGCTTGGAGAAACAATGGGAGAACTTGGTTTAGCATTTATTAAACTATCAAAGTTTGAGACTGAGGAGGGTACTTTAAATTCCCAAAGAGTCCGTGCAACCGATGCCAAACGTGTGGCAACTGCTGCTGTGAAAGCAAGCCGGTTTTATCGAGAAGCAAATGCACAATCAGTTAAACATTTGGATAAACTTCATGAGTACCTTGGCTTGATGCAAGCTGTACACACAGCATTTTCTGACAGATCAAATGCTTTATTGACAGTACAAACCCTCTTAACTGATATCTCTTCTATGAATTCCCGAGTTGAAAAGCTGACAGCTGCCTCATCAAAAATCTTTGGAGGTGACAGGGCTAGGAACAGAAGAATAGAGGAGTTAAAGGAGACAATAAAAGTAACGGAAGGGGCACGGGATTGTGCAGTGAAGGAATATGAACGCATCAAGGAAAATAATAGAAATGAACTACAAAGGTTTGAAACAGAAAGGCGAAATGACTTCTTCAACATGTTGAAAGGATTTGTTTATAATCAGGTAGGATATGCAGAGAAGATTGCTGGTGTCTGGAAAAAAGTGGCAGAAGAAACCAGTGGTTATGCAGGTAGATCAGAGGATTCTCTGCTCTTTGGCACTCATGGCTAGTATCTATTTATTGGCTGTTAATGCAAGTTTCAGCTGTTCGAAGAAGTTTCAATAATTTCAACAAGAATGCCCCCGTAGCAGCTTGAAAGTCTACATATGTGAATTGCATGTGAAGGTTTAAGGCGGTCATTTCTTTTGACAGTAAGTTACCTTCAAACAATAATGCGCGAATTAGAGAATCTTGAATGTCTAATATGTAGTTGAAACATAGGATCATTTGCAGCATTCGTCCTGTAGATGATATGATCTATCTGAATGTTTTTAAAAATGGCATCAGATTCAGGAGATTTTTCATGATGATCTCAGAATTTATTGCTTCCGGATCATATCAAATTTGTAATAGGATTCGCTGCAATGCAAGTTAATTTTGTCCTACTTGGAGGGGCATCACGTTTTTGCAAACTCCTATTCACTTTCGTGATGGATTTTATGCTCGAGAGCATAAATTTGTCAAAACATGTTTAAAAAATTAATAAGTTTGTATTTTGCATATTTTTGCTCCAGTATATTGTTGAAACTGGCATGAGCTAAAATATATTGACCTAAAATTAGCCAATT

Ace file of the UniGene sp_v3.0_unigene93538 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sorting nexin-4, putative n=1 Tax=Ricinus communis RepID=B9RRH9_RICCO	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	26%

Source	Gene names
Sma3	At5g07120; At5g58440; B1036C05.11; B1088C09.4; B1164G01.1; GSVIVT00024005001; GSVIVT00029371001; Os01g0827200; Os05g0346100; Os05g0474500; OsI_04279; OsI_19545; OsI_20316; OsJ_03931; OsJ_18159; OsJ_18900; PHYPADRAFT_184701; POPTRDRAFT_1108742; RCOM_140255

Source	GOs	Term	Type	Identity
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	phosphatidylinositol binding	GO:0035091	Molecular Function	-
Sma3	cell communication	GO:0007154	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Phox homologous domain	IPR001683	-	0.0	-
Sma3	Vps5 C-terminal	IPR015404	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G07120.1	SNX2b sorting nexin 2B chr5:2207065-2209355 REVERSE LENGTH=572	61%
RefSeq	Arabidopsis thaliana	NP_196329.2	sorting nexin 2B [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002325671.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXN5

Fln msg: your sequence is longer than subject: 567 - 408

Fln protein: MMGSENDEAQEAHLFTSTEAMESLVLDQPPQTYISSSDYRSVMSSYAETHSLPPSEDPLQSSFKDSHHKSFKDDFPDDSFVEPPSYADVVFTPFGEESIVGNGNGTARETGNSFSSQSASSSSEYLNIAVVQPQKEQEIANSLVPGGNSYVTYLIVTHTNMSEFGGSEFGVRRRFRDVVTLADRLAESYRGFFIPPRPDKSVVESQVMHKQEFIEQRRIALEKYLCRLAGHPVIRKSLELRLFLQAQGKLPLPSTTDMASRMLDGAVKLPKQLFGEGNAACTAQDVAQPAKGGRDLIRMFKELKQSVTIDWGGVKPLFVEEDKDFLEKKEKLQDLEHELSDASQQAEVLVKAQQELGETMGELGLAFIKLSKFETEEGTLNSQRVRATDAKRVATAAVKASRFYREANAQSVKHLDKLHEYLGLMQAVHTAFSDRSNALLTVQTLLTDISSMNSRVEKLTAASSKIFGGDRARNRRIEELKETIKVTEGARDCAVKEYERIKENNRNELQRFETERRNDFFNMLKGFVYNQVGYAEKIAGVWKKVAEETSGYAGRSEDSLLFGTHG*

Protein Length: 568

Fln nts: CGTCGTGACCTTGGATGGGGGGCATGGAAGTCATCGACGGTATGCAGCAAGATCGAACCAGGGGGGGTTTACCGTCCAATCTTAGTTTTTCACATCAAAATTTCCGCTGCGGCCATGTTCGTTGTTCGATTCTAGCGCAAAATTCGAATTCTTCTGCAGATTAACTCCGGAACAAGACTTTATTTGTCAGAACAGCCAAATATAACTGTGATTCGTCCCAATTTGGACAATTTTAGTGTTTTTTTGATCACTCTAGCTCGGGAATCGATTATCCGTCCGAAATAATACCGATTTTCTGGAAAGAAGCGGTCGCATATGGTCTTTGGAAAAGAGAAAGCGTTTGGATATCATGCATTAAGGCCTCGTATTTCTGTGTTCTATGATCAACGGTACTTGAAAATTGCTGGAAAATCAAGTGCAATTGCAAGTTCCATAAGCATTGTTAACCCCTTTAAAAACTTGATTCTTTTTGAATTGTCTAAATCAAATAAGTGTACAAATCCGCTTTCTGCATTGCAAGCCATTTGACACGGCAGA_-_ATGATGGGCTCTGAAAATGATGAAGCTCAGGAAGCTCACCTCTTCACCTCCACAGAAGCAATGGAAAGCCTGGTCTTAGATCAACCCCCGCAGACATATATATCGAGTAGCGATTACAGGAGCGTAATGTCATCTTATGCTGAAACACATTCATTGCCTCCTTCGGAAGACCCCTTGCAGTCGTCCTTTAAAGATTCACACCATAAGAGCTTCAAAGATGACTTCCCAGATGATTCTTTTGTGGAGCCTCCTTCATATGCAGATGTTGTGTTTACTCCCTTTGGGGAAGAATCCATTGTTGGAAATGGTAACGGCACGGCAAGGGAGACAGGGAACTCATTTTCGTCGCAATCGGCCTCATCAAGTTCAGAATATTTGAATATTGCAGTAGTCCAACCTCAGAAGGAGCAAGAAATTGCAAACTCTCTTGTTCCAGGGGGCAACTCATATGTGACATATCTCATTGTTACTCATACAAACATGTCTGAGTTTGGTGGTTCAGAGTTCGGTGTGAGGCGAAGATTTCGAGATGTGGTAACTTTGGCTGATAGGCTTGCAGAATCTTATCGGGGATTCTTTATTCCTCCCCGCCCGGACAAAAGTGTTGTTGAAAGCCAGGTTATGCATAAACAGGAGTTCATTGAGCAGCGACGAATAGCACTGGAGAAATATCTTTGCAGATTGGCTGGTCATCCAGTGATTAGGAAGAGCCTTGAATTGAGATTATTTCTTCAGGCTCAAGGAAAATTACCCTTACCAAGCACGACAGACATGGCTTCACGAATGCTTGATGGTGCTGTGAAACTACCTAAGCAACTATTTGGAGAGGGCAATGCCGCATGCACAGCTCAAGATGTTGCTCAACCAGCAAAGGGAGGAAGGGATCTGATTAGAATGTTCAAGGAGCTAAAGCAGTCCGTCACAATCGACTGGGGAGGAGTAAAGCCTCTTTTTGTTGAGGAAGACAAGGATTTTTTGGAAAAGAAAGAAAAATTACAAGATCTAGAGCATGAGCTAAGCGATGCTTCTCAGCAGGCTGAGGTACTTGTTAAAGCGCAGCAGGAGCTTGGAGAAACAATGGGAGAACTTGGTTTAGCATTTATTAAACTATCAAAGTTTGAGACTGAGGAGGGTACTTTAAATTCCCAAAGAGTCCGTGCAACCGATGCCAAACGTGTGGCAACTGCTGCTGTGAAAGCAAGCCGGTTTTATCGAGAAGCAAATGCACAATCAGTTAAACATTTGGATAAACTTCATGAGTACCTTGGCTTGATGCAAGCTGTACACACAGCATTTTCTGACAGATCAAATGCTTTATTGACAGTACAAACCCTCTTAACTGATATCTCTTCTATGAATTCCCGAGTTGAAAAGCTGACAGCTGCCTCATCAAAAATCTTTGGAGGTGACAGGGCTAGGAACAGAAGAATAGAGGAGTTAAAGGAGACAATAAAAGTAACGGAAGGGGCACGGGATTGTGCAGTGAAGGAATATGAACGCATCAAGGAAAATAATAGAAATGAACTACAAAGGTTTGAAACAGAAAGGCGAAATGACTTCTTCAACATGTTGAAAGGATTTGTTTATAATCAGGTAGGATATGCAGAGAAGATTGCTGGTGTCTGGAAAAAAGTGGCAGAAGAAACCAGTGGTTATGCAGGTAGATCAGAGGATTCTCTGCTCTTTGGCACTCATGGCTAG___TATCTATTTATTGGCTGTTAATGCAAGTTTCAGCTGTTCGAAGAAGTTTCAATAATTTCAACAAGAATGCCCCCGTAGCAGCTTGAAAGTCTACATATGTGAATTGCATGTGAAGGTTTAAGGCGGTCATTTCTTTTGACAGTAAGTTACCTTCAAACAATAATGCGCGAATTAGAGAATCTTGAATGTCTAATATGTAGTTGAAACATAGGATCATTTGCAGCATTCGTCCTGTAGATGATATGATCTATCTGAATGTTTTTAAAAATGGCATCAGATTCAGGAGATTTTTCATGATGATCTCAGAATTTATTGCTTCCGGATCATATCAAATTTGTAATAGGATTCGCTGCAATGCAAGTTAATTTTGTCCTACTTGGAGGGGCATCACGTTTTTGCAAACTCCTATTCACTTTCGTGATGGATTTTATGCTCGAGAGCATAAATTTGTCAAAACATGTTTAAAAAATTAATAAGTTTGTATTTTGCATATTTTTGCTCCAGTATATTGTTGAAACTGGCATGAGCTAAAATATATTGACCTAAAATTAGCCAATT

Fln Alignment:

AllPine_a_c304___YLNIAVVQPQKEQEIANSLVPGGNSYVTYLIVTHTNMSEFGGSEFGVRRRFRDVVTLADRLAESYRGFFIPPRPDKSVVESQVMHKQEFIEQRRIALEKYLCRLAGHPVIRKSLELRLFLQAQGKLPLPSTTDMASRMLDGAVKLPKQLFGEGNAACTAQDVAQPAKGGRDLIRMFKELKQSVT-IDWGGVKPLFVXXXXXXXXXXXXXXXXXXXLSDASQQAEVLVKAQQELGETMGELGLAFIKLSKFETEEGTLNSQRVRATDAKRVATAAVKASRFYREANAQSVKHLDKLHEYLGLMQAVHTAFSDRSNALLTVQTLLTDISSMNSRVEKLTAASSKIFGGDRARNRRIEELKETIKVTEGARDCAVKEYERIKENNRNELQRFETERRNDFFNMLKGFVYNQVGYAEKIAGVWK
A9NXN5_______________FLKVSVTDPVK-------MGNGVQAYVSYRVITKTNMPEYRGPEKIVIRRYSDFVWLHERLAERNKGIFIPPLPEKNAVE-KFRFSAEFIELRRRGLDVFINRIASHPQLQHSEDLKHFLQAE------------EEAMERVRSLETSIFG---------------KKPSEFMQIFKDVQSKVSDVVLGKEKPI-EESDPEYEKLKHYIFELEDHLAEAQKQAFRLVKRHRELGQSLVDFGKA-VKLL------GTCEGGSLGKAFSELGSQSELLSFKLQKEAQDLLMNFEEPLKDYVRTVQSIKATMADRAQAFRQQCELTESAKLKEINVERLKAT---------RQEHKVPEAEADYREVKVQSEEATKQLQTIIEFMNEEIIRFQEEKTLDLGSVFHEFAKGQAQLANDIAEAWR

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
2319	83			5	0.999887
2372			20	80	0.995493
2373		20		80	0.995493
2374	83		16		0.994512
2387	90			10	0.90298
2539			88	11	0.991528
2541	11			88	0.991528
2543			11	88	0.991528
2555			77	22	0.999999
2740	10		90		0.90298
2749	88			11	0.923564
2752			12	87	0.992554
2758	20		80		0.995493
2760		20		80	0.995493
2761	80	20			0.995493
2765		66	16		0.988826
2766		83	16		0.994523
2767		83		16	0.994523
2769	16	83			0.994523
2771		83	16		0.994523
2772	16			83	0.994517
2773		16	83		0.994516
2811	33	66			0.997453
2812		66	33		0.997453
2813		66		33	0.997453
2814		66	33		0.997453
2815	33	66			0.997453
2818			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain