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UniGene Name: sp_v3.0_unigene85910
Length: 233 nt
 UniGene Fasta
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| >sp_v3.0_unigene85910
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Ace file of the UniGene sp_v3.0_unigene85910
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If you push the Download ace button, you will download an ace file of this UniGene.
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Go to the Tablet ACE viewer Web
| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | DUF605 multi-domain protein | - | - | 2.0e-06 | 30% |
| Sma3 | DNA-directed RNA polymerase | - | - | 1.97e-19 | - |
| Source | ECs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | DNA-directed RNA polymerase. | EC:2.7.7.6 | - | 5.551e-18 | - |
| Source | KEGGs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Purine metabolism | 00230 | 5.551e-18 | % | |
| Sma3 | Pyrimidine metabolism | 00240 | 5.551e-18 | % | |
| Sma3 | Metabolic pathways | 01100 | 5.551e-18 | % |
| Source | Gene names |
|---|---|
| Sma3 | At4g35800; CHLREDRAFT_196948; F4B14.70; GSVIVT00015507001; MICPUCDRAFT_45178; MICPUN_94662; OSTLU_26100; Os05g0151000; OsJ_17146; OsJ_26081; P0001A07.9; PHATRDRAFT_15555; PHYPADRAFT_101222; PHYPADRAFT_93853; RCOM_0782880; RPB1; RPB1-B1 or gene B1; RPB1-B2 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | DNA-directed RNA polymerase II, core complex | GO:0005665 | Cellular Component | 0.0 | - |
| Sma3 | vacuole | GO:0005773 | Cellular Component | 0.0 | - |
| Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
| Sma3 | magnesium ion binding | GO:0000287 | Molecular Function | 0.0 | - |
| Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
| Sma3 | DNA-directed RNA polymerase activity | GO:0003899 | Molecular Function | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
| Sma3 | transcription from RNA polymerase II promoter | GO:0006366 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | RNA polymerase II, heptapeptide repeat, eukaryotic | IPR000684 | - | 0.0 | - |
| Sma3 | RNA polymerase, alpha subunit | IPR000722 | - | 0.0 | - |
| Sma3 | Hydroxymethylglutaryl-CoA reductase, class I/II | IPR002202 | - | 0.0 | - |
| Sma3 | RNA polymerase, N-terminal | IPR006592 | - | 0.0 | - |
| Sma3 | RNA polymerase Rpb1, domain 3 | IPR007066 | - | 0.0 | - |
| Sma3 | RNA polymerase Rpb1, domain 7 | IPR007073 | - | 0.0 | - |
| Sma3 | RNA polymerase Rpb1, domain 6 | IPR007075 | - | 0.0 | - |
| Sma3 | RNA polymerase Rpb1, domain 1 | IPR007080 | - | 0.0 | - |
| Sma3 | RNA polymerase Rpb1, domain 5 | IPR007081 | - | 0.0 | - |
| Sma3 | RNA polymerase Rpb1, domain 4 | IPR007083 | - | 0.0 | - |
| Sma3 | Protein kinase, ATP binding site | IPR017441 | - | 0.0 | - |
| Full-Lengther Next Prediction |
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Fln status: coding
Fln database: testcode
Fln msg:
Test code: 1
Test Code was used to find complete genes when there was not found a reliable orthologue. The best ORF (Open Reading Frame) is shown, and only ORFs > 200pb were analyzed. Your ORF will be more reliable if a stop codon was found before the start codon. A Test Code value > 0.95 means the ORF is probably coding. A Test Code value < 0.74 means the ORF is probably non-coding. Test Code values in between 0.74 and 0.95 mean it is uncertain whether the ORF is coding or not.
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
