SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81687

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene81687
ACAGACGACTTACAAGGACGAGGGGATGTGTATAGAGTTGCTCAGAGAAGCAACAACATCACTCCTCAATTCTTATAACAGTTTTAGCTTTCGTTACAATACTCTCAACGTATTTCTGCATATGAACTCTGCATTACAAGGATCTCTCCATGATGCTCTAAAACAAGCTTTATATTTCAAGAGAGCTCATACCCCTTTATCGGATTACCAT

Ace file of the UniGene sp_v3.0_unigene81687

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7U593_VITVI	-	-	2.0e-08	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%

Source	Gene names
Sma3	GSVIVT00036073001; VITISV_029831;

Source	GOs	Term	Type	e value	Identity
Sma3	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	GO:0016884	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Amidase	IPR000120	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Plant specific eukaryotic initiation factor 4B	IPR010433	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D7U593

Fln msg: STOP codon was not found. Distance to subject end: 7 aas, your sequence is shorter than subject: 70 - 313

Fln protein: QTTYKDEGMCIELLREATTSLLNSYNSFSFRYNTLNVFLHMNSALQGSLHDALKQALYFKRAHTPLSDYH

Protein Length: 71

Fln nts: ACAGACGACTTACAAGGACGAGGGGATGTGTATAGAGTTGCTCAGAGAAGCAACAACATCACTCCTCAATTCTTATAACAGTTTTAGCTTTCGTTACAATACTCTCAACGTATTTCTGCATATGAACTCTGCATTACAAGGATCTCTCCATGATGCTCTAAAACAAGCTTTATATTTCAAGAGAGCTCATACCCCTTTATCGGATTACCAT

Fln Alignment:

GFIJCBT03HKAEI___LLREATTSLLNSYNSFSFRYNTLNVFLHMNSALQGSLHDALKQALYFKRAHT
D7U593_______________LLREAITSLLNSYNSLLFPYHTLGVIQHMSLALMGSQQNVLLTALRFKRANS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain