SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81676

Length: 199 nt

UniGene Fasta

>sp_v3.0_unigene81676
ACCGACGACTACTTATATTTATACACGGTATGAGGTGGTGGGAAGATTTATGATGGTGTTTATCTGGGGAGGGGTGATTTGTACTTGTATGCAAGTGGAGGAGGTGGGGATTTGTACTTATACAGTGGAGGTGGTGGGGATTTGTAATGATATGGAAGAGGAGGTGGTGGAGGAGGAGACTTGTAGAGATATGGAGGAG

Ace file of the UniGene sp_v3.0_unigene81676

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Extensin_2 multi-domain protein	-	-	2.0e-16	55%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	35%
Sma3	Extensin	-	-	3.513e-23	-

Source	Gene names
Sma3	AcExt1; At1g26240; At1g26250; Ext; Ext1.2A; Ext1.2B; Ext26G; F28B23.10; F28B23.9; HRGP-2; HRGP-3; POPTRDRAFT_647247; POPTRDRAFT_664707; POPTRDRAFT_761027; POPTRDRAFT_797735; POPTRDRAFT_816810; RCOM_0706560; RCOM_0792720; SbHRGP3; StHRGP; cyc15; ext127; ex

Source	GOs	Term	Type	e value	Identity
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	0.0	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	0.0	-
Sma3	Extensin repeat	IPR006706	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5B4T6

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 65 - 358

Fln protein: RRLLIFIHGMRWWEDL*WCLSGEG*FVLVCKWRRWGFVLIQWRWWGFVMIWKRRWWRRRLVEIWR

Protein Length: 66

Fln nts: ACCGACGACTACTTATATTTATACACGGTATGAGGTGGTGGGAAGATTTATGATGGTGTTTATCTGGGGAGGGGTGATTTGTACTTGTATGCAAGTGGAGGAGGTGGGGATTTGTACTTATACAGTGGAGGTGGTGGGGATTTGTAATGATATGGAAGAGGAGGTGGTGGAGGAGGAGACTTGTAGAGATATGGAGGAG

Fln Alignment:

GFIJCBT03F90EH___LLIFI-HGMRWWED-L*WCLSGEG*FVLVCKWRRWGFVLIQWR------------WWGFVMIWKRRWWRRRLVEIW
A5B4T6_______________VLVFISRGWWWWRVVLVWLLG---------RWRWWGLVLVDWRRRWWRLVFVWWWWWRVVHVWLLRWWWWRVVHVW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain