SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81672

Length: 505 nt

UniGene Fasta

>sp_v3.0_unigene81672
ACACACGACTGGGGCAATGAACTGCGCTCCCCTAATCTCGCATTTATGTCATCTGCAAGTTTAGGGGAGCGCAGTTCATTGCCCCCATCAGGACCTGAAACACAGCGTCATCTGTCAGCGATCAGGCGTAAGATTACCATCCTCGGCACCAGGCTCGACAGCTTAGAGAGTCTTCTCCCCAAGCTTCCTTCCAGACAACCCATAACGGAAAAGGAATTACATCGACGACAAGACATGCTTGTCAATCTTCGGTCAAAATCAAACCAGATGGCTTCTGCTTTGAACATGTCACGTTTTGGTAACAGGGGTGACTTGCTTGGTCAAGATAACAAACCCGTTTCAGAAATAAACAGAACTGCTGGATTGGATAATTATGGTCTTGTTGGACTCCAGCGGCAAATTATGAAAGAACAAGATGAGGGTCTTGGAAAACTAGAGGAGACTGTAATAAGCACAAGCACATTGCATTGGCTGTCAATGAAGAATTGGATTTGCAGACTCGGTC

Ace file of the UniGene sp_v3.0_unigene81672

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	Gene names
Sma3	At1g16230; At1g16240; At1g79590; F20B17.2; GSVIVT00012582001; GSVIVT00027247001; OJ1217_F02.19; OSJNBa0091M20.18; OSJNBb0088N06.3; Os02g0119400; Os08g0277900; OsI_05611; OsI_28572; OsI_28573; OsJ_05145; OsJ_26713; PHYPADRAFT_111312; PHYPADRAFT_195156; POP

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	late endosome membrane	GO:0031902	Cellular Component	-
Sma3	SNAP receptor activity	GO:0005484	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	0.0	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G79590.1	SYP52, ATSYP52 syntaxin of plants 52 chr1:29947064-29948304 FORWARD LENGTH=233	63%
RefSeq	Arabidopsis thaliana	NP_565213.1	syntaxin-52 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002307952.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR49

Fln msg: Distance to subject end: 60 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 168 - 233

Fln protein: THDWGNELRSPNLAFMSSASLGERSSLPPSGPETQRHLSAIRRKITILGTRLDSLESLLPKLPSRQPITEKELHRRQDMLVNLRSKSNQMASALNMSRFGNRGDLLGQDNKPVSEINRTAGLDNYGLVGLQRQIMKEQDEGLGKLEETVISTSTLHWLSMKNWICRLG

Protein Length: 169

Fln nts: ACACACGACTGGGGCAATGAACTGCGCTCCCCTAATCTCGCATTTATGTCATCTGCAAGTTTAGGGGAGCGCAGTTCATTGCCCCCATCAGGACCTGAAACACAGCGTCATCTGTCAGCGATCAGGCGTAAGATTACCATCCTCGGCACCAGGCTCGACAGCTTAGAGAGTCTTCTCCCCAAGCTTCCTTCCAGACAACCCATAACGGAAAAGGAATTACATCGACGACAAGACATGCTTGTCAATCTTCGGTCAAAATCAAACCAGATGGCTTCTGCTTTGAACATGTCACGTTTTGGTAACAGGGGTGACTTGCTTGGTCAAGATAACAAACCCGTTTCAGAAATAAACAGAACTGCTGGATTGGATAATTATGGTCTTGTTGGACTCCAGCGGCAAATTATGAAAGAACAAGATGAGGGTCTTGGAAAACTAGAGGAGACTGTAATAAGCACAAGCACATTGCATTGGCTGTCAATGAAGAATTGGATTTGCAGACTCGGTC

Fln Alignment:

GFIJCBT03GCYDY___WGNELRSPN-LAFMSSASLGERSSLPPSGPETQRHLSAIRRKITILGTRLDSLESLLPKLPSRQPITEKELHRRQDMLVNLRSKSNQMASALNMSRFGNRGDLLGQDNKPVSEINRTAGLDNYGLVGLQRQIMKEQDEGLGKLEETVIST
A9NR49_______________WVKEFNEASKLADDINARLGERSSLPPSGPETQRHLSAIRRKITILGTRLDSLENLLPKLPSRQPISEKELHRRQDMLVNLRSKSNQMASALNMSRFGNRSDLLGQDNKPVSEINRTTGLDNYGLVGLQRQIMKEQDEGLGKLEETVIST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain