SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81642

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene81642
ACTTACGACGACTGCTGGACCAGGGGTGTAATTAAAAGGGCAAACCCCTCCAAAGTCGTGGTTATGTATTTTTAATTACACCCCTGGTCCAGCAAAGGGGAAGCTTTGCTGGGACAGACAGCTGGATTCTCTAAGTGCACTCCAATCAGGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGC

Ace file of the UniGene sp_v3.0_unigene81642

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acid phosphatase, putative n=1 Tax=Ricinus communis RepID=B9RWG6_RICCO	-	-	4.0e-17	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Acid phosphatase, putative	-	-	9.35e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	4.703e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		4.703e-12	%
Sma3	Riboflavin metabolism	00740		4.703e-12	%

Source	Gene names
Sma3	GSVIVT00010414001; GSVIVT00011763001; GSVIVT00020463001; GSVIVT00031672001; LOC_Os03g63074; OSJNBb0043P23.2; OSJNBb0096M04.130; Os03g0848200; OsI_14321; OsJ_13361; PAP; PHYPADRAFT_187098; POPTRDRAFT_414694; POPTRDRAFT_553182; POPTRDRAFT_778303; RCOM_10192

Source	GOs	Term	Type	Identity
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Orn/Lys/Arg decarboxylase, major domain	IPR000310	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Orn/Lys/Arg decarboxylase, C-terminal	IPR008286	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3	Ribosomal protein L30, conserved site	IPR018038	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G07130.1	ATPAP15, PAP15 purple acid phosphatase 15 chr3:2255763-2257981 REVERSE LENGTH=532	8.0e-16	55%
RefSeq	Arabidopsis thaliana	NP_187369.1	purple acid phosphatase 15 [Arabidopsis thaliana]	1.0e-15	55%
RefSeq	Populus trichocarpa	XP_002323987.1	predicted protein [Populus trichocarpa]	5.0e-22	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP18

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 25 aas, your sequence is shorter than subject: 73 - 151

Fln protein: LTTTAGPGV*LKGQTPPKSWLCIFNYTPGPAKGKLCWDRQLDSLSALQSGFGHGILEVKNSTHALWTWHRNQD

Protein Length: 74

Fln nts: ACTTACGACGACTGCTGGACCAGGGGTGTAATTAAAAGGGCAAACCCCTCCAAAGTCGTGGTTATGTATTTTTAATTACACCCCTGGTCCAGCAAAGGGGAAGCTTTGCTGGGACAGACAGCTGGATTCTCTAAGTGCACTCCAATCAGGCTTTGGGCATGGCATATTAGAGGTAAAGAATTCAACTCATGCACTTTGGACATGGCATCGCAATCAGGATGC

Fln Alignment:

GDTE5QK01EZRYK___QSGFGHGILEVKNSTHALWTWHRNQD
B8LP18_______________EASFGHAILEIKNRTHAFYHWHRNQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain