SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81624

Length: 88 nt

UniGene Fasta

>sp_v3.0_unigene81624
CAGCCGCATTCGTGGACCAAATGACCAGTATATAAATCACATTATGAATGAAACAGGAGCTACTGTTGTTCTAAGGGGAAAAGGTTCT

Ace file of the UniGene sp_v3.0_unigene81624

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein RIK [Arabidopsis thaliana] sp\|Q9LIA4.2\|RIK_ARATH RecName: Full=Protein RIK; AltName: Full=Rough sheath 2-interacting KH domain protein; Short=RS2-interacting KH domain protein gb\|AAY24687.1\| KH-domain protein [Arabidopsis thaliana] gb\|AEE77580.1\|	-	-	3.0e-08	93%
FL-Next	sp=Protein RIK; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	93%
Sma3	Rough sheath 2-interacting KH domain protein	-	-	2.665e-10	-

Source	Gene names
Sma3	At3g29390; LOC_Os03g11520; MUO10.13; OsI_10516; OsJ_09904; POPTRDRAFT_577747; RCOM_1024860; RIK;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	K Homology domain	IPR004087	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G29390.1	RIK RS2-interacting KH protein chr3:11289675-11294524 FORWARD LENGTH=578	1.0e-12	93%
RefSeq	Arabidopsis thaliana	NP_566850.3	protein RIK [Arabidopsis thaliana]	2.0e-12	93%
RefSeq	Populus trichocarpa	XP_002323898.1	predicted protein [Populus trichocarpa]	2.0e-11	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LIA4

Fln msg: Distance to subject end: 339 aas, your sequence is shorter than subject: 29 - 578

Fln protein: SRIRGPNDQYINHIMNETGATVVLRGKGS

Protein Length: 30

Fln nts: CAGCCGCATTCGTGGACCAAATGACCAGTATATAAATCACATTATGAATGAAACAGGAGCTACTGTTGTTCTAAGGGGAAAAGGTTCT

Fln Alignment:

GDTE5QK01CW6EL___SRIRGPNDQYINHIMNETGATVVLRGKGS
Q9LIA4_______________ARIRGPNDQYINHIMNETGATVVLRGRGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain