SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81614

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene81614
AAAGTGCATCAGGGCTGGCGGTAAGCACAATGACCTGGAGGACGTTGGAAAAGACTCCTACCATCACACATTCTTTGAGATGCTAGGAAACTGGTCGTTTGGTGATTACTTCAAGAAAGAAGCCATCGAATTCTCATGGGAGGTCCTGACAAAAGTTTACGGACTTCCTAAAGACCGGCTATACGTCACCTACTATGCTGGAGACCCACAAAATGGAATACCCACCGACGAGGA

Ace file of the UniGene sp_v3.0_unigene81614

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alanyl-tRNA synthetase [Saccharomyces cerevisiae YJM789]	-	-	8.0e-33	81%
FL-Next	Isoform Cytoplasmic of Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS	-	-	0.0	78%
Sma3	Alanyl-tRNA synthetase	-	-	9.882e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alanine--tRNA ligase.	EC:6.1.1.7	-	7.061e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA biosynthesis	00970		7.061e-12	%

Source	Gene names
Sma3	ALARS; ALATS; ALATS1; ALATS2; At1g50200; CHLREDRAFT_38643; F14I3.17; GSVIVT00013953001; GSVIVT00030223001; GSVIVT00036226001; LOC_Os10g10244; MICPUCDRAFT_45734; MICPUN_62346; MICPUN_79369; OSJNBb0022I16.5; OSTLU_37270; Os06g0245800; Os10g0182000; OsI_2235

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	alanine-tRNA ligase activity	GO:0004813	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	alanyl-tRNA aminoacylation	GO:0006419	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Homeobox protein, antennapedia type, conserved site	IPR001827	-	-
Sma3	Alanyl-tRNA synthetase, class IIc	IPR002318	-	-
Sma3	Phosphoesterase, DHHA1	IPR003156	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Protein of unknown function DUF544	IPR007518	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Threonyl/alanyl tRNA synthetase, SAD	IPR012947	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, N-terminal	IPR018164	-	-
Sma3	Alanyl-tRNA synthetase, class IIc, core domain	IPR018165	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G50200.1	ALATS, ACD Alanyl-tRNA synthetase chr1:18591429-18598311 REVERSE LENGTH=1003	6.0e-40	78%
RefSeq	Arabidopsis thaliana	NP_001185186.1	Alanyl-tRNA synthetase [Arabidopsis thaliana]	7.0e-40	78%
RefSeq	Populus trichocarpa	XP_002307181.1	predicted protein [Populus trichocarpa]	9.0e-39	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P36428-2

Fln msg: Distance to subject end: 798 aas, your sequence is shorter than subject: 77 - 955

Fln protein: KCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEFSWEVLTKVYGLPKDRLYVTYYAGDPQNGIPTDE

Protein Length: 78

Fln nts: AAAGTGCATCAGGGCTGGCGGTAAGCACAATGACCTGGAGGACGTTGGAAAAGACTCCTACCATCACACATTCTTTGAGATGCTAGGAAACTGGTCGTTTGGTGATTACTTCAAGAAAGAAGCCATCGAATTCTCATGGGAGGTCCTGACAAAAGTTTACGGACTTCCTAAAGACCGGCTATACGTCACCTACTATGCTGGAGACCCACAAAATGGAATACCCACCGACGAGGA

Fln Alignment:

GDTE5QK01C7KXO___KCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAIEFSWEVLTKVYGLPKDRLYVTYYAGDPQNGIPTD
P36428-2_____________KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain