SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81572

Length: 160 nt

UniGene Fasta

>sp_v3.0_unigene81572
AATTATGGTTTTACTTATGCATGCTGTAGAGAAAGAGAGTCTTCAATATGAAGGTTTGCACGTGTGGAATTTATTCATTCGAAGGCTTGCTCAAGTATCTCCTTCAAGCCTCAAACACGTCTCTCCTCAGGTGGTGGCTACACTTATGCCATGTCTTGAG

Ace file of the UniGene sp_v3.0_unigene81572

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine/threonine-protein kinase ATR [Arabidopsis thaliana] sp\|Q9FKS4.2\|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; Al	-	-	1.0e-09	60%
FL-Next	sp=Serine/threonine-protein kinase ATR; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%

Source	Gene names
Sma3	GSVIVT00036181001; POPTRDRAFT_818220;

Source	GOs	Term	Type	e value	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	0.0	-
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	UME	IPR012993	-	-
Sma3	PIK-related kinase	IPR014009	-	-
Sma3	Phosphatidylinositol 3/4-kinase, conserved site	IPR018936	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G40820.1	ATRAD3, ATR, ATATR Ataxia telangiectasia-mutated and RAD3-related chr5:16343860-16353847 REVERSE LENGTH=2702	1.0e-13	60%
RefSeq	Arabidopsis thaliana	NP_198898.2	serine/threonine-protein kinase ATR [Arabidopsis thaliana]	2.0e-13	60%
RefSeq	Populus trichocarpa	XP_002305538.1	predicted protein [Populus trichocarpa]	9.0e-14	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FKS4

Fln msg: Distance to subject end: 1509 aas, your sequence is shorter than subject: 53 - 2702

Fln protein: IMVLLMHAVEKESLQYEGLHVWNLFIRRLAQVSPSSLKHVSPQVVATLMPCLE

Protein Length: 54

Fln nts: AATTATGGTTTTACTTATGCATGCTGTAGAGAAAGAGAGTCTTCAATATGAAGGTTTGCACGTGTGGAATTTATTCATTCGAAGGCTTGCTCAAGTATCTCCTTCAAGCCTCAAACACGTCTCTCCTCAGGTGGTGGCTACACTTATGCCATGTCTTGAG

Fln Alignment:

GDTE5QK01BCPUK___IMVLLMHAVEKESLQYEGLHVWNLFIRRLAQVSPSSLKHVSPQVVATLMPCLE
Q9FKS4_______________LMVLLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain