SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81550

Length: 354 nt

UniGene Fasta

>sp_v3.0_unigene81550
ACAGCTTTCACTACGCTCGCCGACAGTTCAACCTCATCGAGGACAAGCTCCTCCGCTACCACTTCCTTAATGACTTCGACAAGGCCATGCAATGGACAGAGAACAAGTATGGCTGGCTGCACTCTCCTCAAGCATACATCAGCTTGAAGAACGAGAGCGACAAAGTCATTGTCTTCGAGCGCGCCGGTCTGCTGTGGATCTTCAACTTCCACCCGTCCAGCTCCTTCACCGACTACCGTGTTGGCGTCGAGCAGGCGGGTACTTACCGCGTGGTTCTCAACTCAGATGATGAGAAGTTTGGTGGTTTGGCGCGCATTTCGAACGACACGAGGCATTTCACGACGGACTTTGAGT

Ace file of the UniGene sp_v3.0_unigene81550

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1,4-alpha-glucan-branching enzyme n=3 Tax=Emericella nidulans RepID=GLGB_EMENI	-	-	0.0	77%
FL-Next	sp=1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Sma3	Starch branching enzyme II	-	-	1.012e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	1,4-alpha-glucan branching enzyme.	EC:2.4.1.18	-	1.817e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.817e-17	%
Sma3	Metabolic pathways	01100		1.817e-17	%

Source	Gene names
Sma3	At2g36390; H0321H01.10; Os02g0528200; OsI_07480; OsI_15790; OsJ_06982; OsJ_14706; P0475F05.16; POPTRDRAFT_589574; POPTRDRAFT_761599; RBE3; RBE4; SBE; SBE IIb; SBE1; Sbe2; Sbe2.1; Sbe2a; ae; ae1; sbe2; sbe2-1; sbeIIa; sbeIIb; sbeiia;

Source	GOs	Term	Type	Identity
Sma3	amyloplast	GO:0009501	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	1,4-alpha-glucan branching enzyme activity	GO:0003844	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	amylopectin biosynthetic process	GO:0010021	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 13, N-terminal	IPR004193	-	-
Sma3	Glycosyl hydrolase, family 13, catalytic domain	IPR006047	-	-
Sma3	Alpha-amylase, C-terminal all beta	IPR006048	-	-
Sma3	FBD	IPR006566	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36390.1	SBE2.1, BE3 starch branching enzyme 2.1 chr2:15264283-15269940 FORWARD LENGTH=858	3.0e-31	47%
RefSeq	Arabidopsis thaliana	NP_181180.1	1,4-alpha-glucan branching enzyme [Arabidopsis thaliana]	4.0e-31	47%
RefSeq	Populus trichocarpa	XP_002326414.1	predicted protein [Populus trichocarpa]	2.0e-32	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23647

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 117 - 858

Fln protein: SFHYARRQFNLIEDKLLRYHFLNDFDKAMQWTENKYGWLHSPQAYISLKNESDKVIVFERAGLLWIFNFHPSSSFTDYRVGVEQAGTYRVVLNSDDEKFGGLARISNDTRHFTTDFE

Protein Length: 118

Fln nts: ACAGCTTTCACTACGCTCGCCGACAGTTCAACCTCATCGAGGACAAGCTCCTCCGCTACCACTTCCTTAATGACTTCGACAAGGCCATGCAATGGACAGAGAACAAGTATGGCTGGCTGCACTCTCCTCAAGCATACATCAGCTTGAAGAACGAGAGCGACAAAGTCATTGTCTTCGAGCGCGCCGGTCTGCTGTGGATCTTCAACTTCCACCCGTCCAGCTCCTTCACCGACTACCGTGTTGGCGTCGAGCAGGCGGGTACTTACCGCGTGGTTCTCAACTCAGATGATGAGAAGTTTGGTGGTTTGGCGCGCATTTCGAACGACACGAGGCATTTCACGACGGACTTTGAGT

Fln Alignment:

GDTE5QK01DF3RF___SFHYARRQFNLIEDKLLRYHFLNDFDKAMQWTENKYGWLHSPQAYISLKNESDKVIVFERAGLLWIFNFHPSSSFTDYRVGVEQAGTYRVVLNSDDEKFGGLARISNDTRHFTTD
O23647_______________SYDKCRRRFDLGDAEYLRYHGLQEFDRAMQNLEETYGFMTSEHQYISRKDEGDRVIVFERGNLLFVFNFHWTNSYSDYRIGCSVPGKYKIVLDSDNSLFGGFNRLDDSAEFFTSD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain