SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81498

Length: 169 nt

UniGene Fasta

>sp_v3.0_unigene81498
AACAGAGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTATGTCGCCATCCAGGCTGTATTGTCCCTGTACGCCTCAGGAAGGACCACCGGTATTGTGATGGACTCTGGTGATGGTGTCAGCCACACAGTCCCCATCTACGAGGGTTATGCCC

Ace file of the UniGene sp_v3.0_unigene81498

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Actin (Fragment) n=1 Tax=Anopheles fluviatilis RepID=Q5EBS4_9DIPT	-	-	2.0e-24	100%
FL-Next	tr=Actin 2; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	98%

Source	Gene names
Sma3	AC1; AC58; AC71; AC85C; AC97; ACT; ACT-1; ACT1; ACT11; ACT12; ACT14; ACT2; ACT3; ACT4; ACT5; ACT7; ACT9; Ac1; Act; Act1; Act2; Act3; At3g12110; At3g12110/T21B14_108; At3g46520; At5g59370; F12A12.40; F2O15.3; GSVIVT00018490001; GSVIVT00024342001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytoskeleton	GO:0005856	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Actin-like	IPR004000	-	-
Sma3	Actin, conserved site	IPR004001	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G59370.1	ACT4 actin 4 chr5:23950109-23951586 FORWARD LENGTH=377	1.0e-31	98%
RefSeq	Arabidopsis thaliana	NP_187818.1	actin-11 [Arabidopsis thaliana]	1.0e-31	98%
RefSeq	Populus trichocarpa	XP_002316289.1	actin 5 [Populus trichocarpa]	1.0e-31	98%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C3VIW4

Fln msg: Distance to subject end: 205 aas, your sequence is shorter than subject: 56 - 377

Fln protein: NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYA

Protein Length: 57

Fln nts: AACAGAGAGAAGATGACCCAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTATGTCGCCATCCAGGCTGTATTGTCCCTGTACGCCTCAGGAAGGACCACCGGTATTGTGATGGACTCTGGTGATGGTGTCAGCCACACAGTCCCCATCTACGAGGGTTATGCCC

Fln Alignment:

GDTE5QK01CFHZJ___NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYA
C3VIW4_______________NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain