SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81476

Length: 102 nt

UniGene Fasta

>sp_v3.0_unigene81476
AAGCCTGCTTTTCCAGAGAATGGCTGCTTATGAAGAGAAATTCTTTTGTGTATATATTCAAAACAGCACAGATTATGGTTGTAGGGGCAATCACAATGACCA

Ace file of the UniGene sp_v3.0_unigene81476

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter G family member 39 n=3 Tax=Arabidopsis RepID=AB39G_ARATH	-	-	2.0e-07	75%
FL-Next	sp=ABC transporter G family member 39; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	ATP-binding cassette transporter, putative	-	-	2.308e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	1.484e-06	-

Source	Gene names
Sma3	At1g66950; F1O19.3; GSVIVT00022062001; LOC_Os02g11760; OJ1003_F05.29-1; OJ1006_A02.12-1; Os02g0208300; OsI_06321; OsJ_05840; PDR11; PDR7; RCOM_0023060; RCOM_0792930; T4O24.9; VITISV_006821;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G66950.1	PDR11, ATPDR11 pleiotropic drug resistance 11 chr1:24978239-24984461 FORWARD LENGTH=1454	1.0e-11	75%
RefSeq	Arabidopsis thaliana	NP_176867.2	ABC transporter G family member 39 [Arabidopsis thaliana]	2.0e-11	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7PC84

Fln msg: Distance to subject end: 892 aas, your sequence is shorter than subject: 33 - 1454

Fln protein: ACFSREWLLMKRNSFVYIFKTAQIMVVGAITMT

Protein Length: 34

Fln nts: AAGCCTGCTTTTCCAGAGAATGGCTGCTTATGAAGAGAAATTCTTTTGTGTATATATTCAAAACAGCACAGATTATGGTTGTAGGGGCAATCACAATGACCA

Fln Alignment:

GDTE5QK01CN5IE___ACFSREWLLMKRNSFVYIFKTAQIMVVGAITMT
Q7PC84_______________ACFDREWLLMKRNSFVYVFKTVQITIMSLITMT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain