SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81461

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene81461
GACAGAATGATTAGAAGAAATGTGGTTTCCTGGAATTCCGTTATTGCTGGTTATGCTCAGAATGGATATCACAGTGAGGCTTTGACACTCTTCAATCAGATGCAACTTGCAGGCTTGAAAGCAAACATGATCACCTTGGTGAGCGTGCTCCCTTCCTGTGGCCATTTAGCAGCTCTGCAACAGGT

Ace file of the UniGene sp_v3.0_unigene81461

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TB04_RICCO	-	-	6.0e-11	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20230.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:7009570-7011852 FORWARD LENGTH=760	7.0e-16	55%
RefSeq	Arabidopsis thaliana	NP_173449.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	9.0e-16	55%
RefSeq	Populus trichocarpa	XP_002328140.1	predicted protein, partial [Populus trichocarpa]	1.0e-14	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 353 aas, your sequence is shorter than subject: 61 - 795

Fln protein: DRMIRRNVVSWNSVIAGYAQNGYHSEALTLFNQMQLAGLKANMITLVSVLPSCGHLAALQQ

Protein Length: 62

Fln nts: GACAGAATGATTAGAAGAAATGTGGTTTCCTGGAATTCCGTTATTGCTGGTTATGCTCAGAATGGATATCACAGTGAGGCTTTGACACTCTTCAATCAGATGCAACTTGCAGGCTTGAAAGCAAACATGATCACCTTGGTGAGCGTGCTCCCTTCCTGTGGCCATTTAGCAGCTCTGCAACAGGT

Fln Alignment:

GDTE5QK01EOR3O___DRMIRRNVVSWNSVIAGYAQNGYHSEALTLFNQMQLAGLKANMITLVSVLPSCGHLAALQQ
B8LQA8_______________DRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain