SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81379

Length: 185 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene81379
CACTTGACAGTCGATGCCGAGTGTTATGTTGGTAGCAGGGGCCTTCCTACACTATGGAATACTGCTAGAAACCTGGTGGAATACTTGATCGGCATGGTTGGACTGTCACTCACAAAGAAAGTAAATCTCACAATTCTGAAAGACGCAAGTGGAATCCTCAAACCATCTAGAATGACTTTGTTGTT

Ace file of the UniGene sp_v3.0_unigene81379 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9RQF2_RICCO	-	-	1.0e-16	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	ATP-binding cassette transporter, putative	-	-	5.147e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	1.719e-08	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	4.117e-07	-

Source	Gene names
Sma3	At1g15210; At1g59870; F23H11.19; F9L1.15; GSVIVT00034307001; GSVIVT00034310001; GSVIVT00034318001; GSVIVT00034321001; LOC_Os01g52560; Os01g0724400; Os01g0724500; OsI_03578; OsJ_03311; PDR15; PDR7; PDR8; PHYPADRAFT_128826; PHYPADRAFT_226738; POPTRDRAFT_589

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15210.1	PDR7, ATPDR7 pleiotropic drug resistance 7 chr1:5231552-5236573 REVERSE LENGTH=1442	9.0e-20	63%
RefSeq	Arabidopsis thaliana	NP_172973.1	ABC transporter G family member 35 [Arabidopsis thaliana]	1.0e-19	63%
RefSeq	Populus trichocarpa	XP_002303308.1	predicted protein [Populus trichocarpa]	2.0e-20	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Distance to subject end: 258 aas, your sequence is shorter than subject: 61 - 443

Fln protein: HLTVDAECYVGSRGLPTLWNTARNLVEYLIGMVGLSLTKKVNLTILKDASGILKPSRMTLL

Protein Length: 62

Fln nts: CACTTGACAGTCGATGCCGAGTGTTATGTTGGTAGCAGGGGCCTTCCTACACTATGGAATACTGCTAGAAACCTGGTGGAATACTTGATCGGCATGGTTGGACTGTCACTCACAAAGAAAGTAAATCTCACAATTCTGAAAGACGCAAGTGGAATCCTCAAACCATCTAGAATGACTTTGTTGTT

Fln Alignment:

GDTE5QK01ET8AR___LTVDAECYVGSRGLPTLWNTARNLVEYLIGMVGLSLTKKVNLTILKDASGILKPSRMTLL
B8LN70_______________LNISADVYVGSRALPTLINWTVNIVEDALETLRLRKTQKKNLTILHDISGIVKSGRLTLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain