SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81362

Length: 262 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene81362
CTAGTGCCTCATCGTTGTCCAACGAGGCGCCGTGGATAATGACAGTGGGGGCAAGTTCCGTGGACCGAAGTTTTCCCGCAATTGCCGTGTTGGGAAACGGTCGCGCCTACCGTGGCGCATCTCTCTACACAGGAAAGCCTCTCGGAACCAAACCCAATTTGACACTCGTGTACGGAGATTTCTGTTTGGATGACTCTCTGGAACCCGAGATGGTCCGACAGAAAATCGTGATCTGCGAACGAGGAATCACAGCTAGAATCGA

Ace file of the UniGene sp_v3.0_unigene81362 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Subtilase-like protein [Arabidopsis thaliana] gb\|AAC95169.1\| subtilisin-like serine protease, putative [Arabidopsis thaliana] gb\|AAK59595.1\| putative subtilisin serine protease [Arabidopsis thaliana] gb\|AAN13182.1\| putative subtilisin serine protease [Ara	-	-	3.0e-18	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Xylem serine proteinase 1, putative	-	-	2.73e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cucumisin.	EC:3.4.21.25	-	5.074e-06	-

Source	Gene names
Sma3	At2g05920; GSVIVT00016430001; GSVIVT00034063001; GSVIVT00034064001; LOC_Os03g40830; MtrDRAFT_AC158501g3v2; OSJNBa0004G03.20; OSJNBa0091E13.30; Os03g0605300; OsI_12551; OsJ_11683; POPTRDRAFT_557090; POPTRDRAFT_645825; POPTRDRAFT_826351; RCOM_0396690; RCOM_

Source	GOs	Term	Type	Identity
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	negative regulation of catalytic activity	GO:0043086	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G05920.1	Subtilase family protein chr2:2269831-2272207 REVERSE LENGTH=754	4.0e-23	51%
RefSeq	Arabidopsis thaliana	NP_565330.1	Subtilase-like protein [Arabidopsis thaliana]	5.0e-23	51%
RefSeq	Populus trichocarpa	XP_002326128.1	predicted protein [Populus trichocarpa]	3.0e-23	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLN6

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 86 - 522

Fln protein: SASSLSNEAPWIMTVGASSVDRSFPAIAVLGNGRAYRGASLYTGKPLGTKPNLTLVYGDFCLDDSLEPEMVRQKIVICERGITARI

Protein Length: 87

Fln nts: CTAGTGCCTCATCGTTGTCCAACGAGGCGCCGTGGATAATGACAGTGGGGGCAAGTTCCGTGGACCGAAGTTTTCCCGCAATTGCCGTGTTGGGAAACGGTCGCGCCTACCGTGGCGCATCTCTCTACACAGGAAAGCCTCTCGGAACCAAACCCAATTTGACACTCGTGTACGGAGATTTCTGTTTGGATGACTCTCTGGAACCCGAGATGGTCCGACAGAAAATCGTGATCTGCGAACGAGGAATCACAGCTAGAATCGA

Fln Alignment:

GDTE5QK01AQNGE___SSLSNEAPWIMTVGASSVDRSFPAIAVLGNGRAYRGASLYTGKPLGTKPNLTLVYG---------DFCLDDSLEPEMVRQKIVICE-RGITA
B8LLN6_______________SAIFNTAPWITTVGASTIDREFPAPVVLGNGQNYRGSSLYKGEPVGNE-QLPLVYGKTASRNETANLCLAGSHDPKMVSGKIVLCDLGGITA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain