SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81300

Length: 159 nt

UniGene Fasta

>sp_v3.0_unigene81300
ATCGATCCTTTCAGTTTGTTGATCAGCCATTTTGTTCCTCCTTCAACACTGTTTGAAAAAGCCACTACCTGATCTCTTACAGGAGTATCATCTACCTAAAGGTCTATTTCCCCAAAATGCTACAAATTATGAATTTGATGAAGAGACAGGAAAGCTCAC

Ace file of the UniGene sp_v3.0_unigene81300

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF538 domain containing protein	-	-	2.0e-09	50%
FL-Next	sp=Uncharacterized protein At5g01610; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%

Source	Gene names
Sma3	At5g01610; At5g37070; F7A7.130; OSJNBb0049O23.27; Os01g0565800; OsI_02462; OsI_02468; OsJ_02255; P0697C12.23; POPTRDRAFT_560948; POPTRDRAFT_835593;

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF538	IPR007493	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G37070.1	Protein of unknown function, DUF538 chr5:14651091-14652147 FORWARD LENGTH=170	7.0e-13	71%
RefSeq	Arabidopsis thaliana	NP_198523.1	uncharacterized protein [Arabidopsis thaliana]	9.0e-13	71%
RefSeq	Populus trichocarpa	XP_002323612.1	predicted protein [Populus trichocarpa]	3.0e-12	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M015

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 85 aas, your sequence is shorter than subject: 52 - 170

Fln protein: SILSVC*SAILFLLQHCLKKPLPDLLQEYHLPKGLFPQNATNYEFDEETGKL

Protein Length: 53

Fln nts: ATCGATCCTTTCAGTTTGTTGATCAGCCATTTTGTTCCTCCTTCAACACTGTTTGAAAAAGCCACTACCTGATCTCTTACAGGAGTATCATCTACCTAAAGGTCTATTTCCCCAAAATGCTACAAATTATGAATTTGATGAAGAGACAGGAAAGCTCAC

Fln Alignment:

GDTE5QK01DGWLU___LKKPLPDLLQEYHLPKGLFPQNATNYEFDEETGKL
Q9M015_______________MQKPLPELLKEYDLPIGIFPGDATNYEFDEETKKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain