SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81227

Length: 242 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene81227
CCATGATTTCCGCAACGGCGTGTGTCGAAACCTCGTGTGCTCTGACCTCCTCACCCGGGGTATTGATATTCAAGCGGTCAATGTTGTCATCAACTTTGATTTTCCCAAAAACTCGGAAACGTATCTTCACCGTATTGGTCGTTCTGGTCGATTCGGGCATCTGGGTCTCGCCATCAACCTGGTGACGTTCGATGATCGCTTTAACCTCTACCGTATCGAACAAGAGCTTGGGACGGAGATTG

Ace file of the UniGene sp_v3.0_unigene81227 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130] gb\|EAU89171.1\| ATP-dependent RNA helicase dhh1 [Coprinopsis cinerea okayama7#130]	-	-	3.0e-39	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	DEAD-box ATP-dependent RNA helicase 6	-	-	9.382e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	3.362e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	3.362e-11	%
Sma3	Lipopolysaccharide biosynthesis	00540	3.362e-11	%
Sma3	Folate biosynthesis	00790	3.362e-11	%
Sma3	Metabolic pathways	01100	3.362e-11	%

Source	Gene names
Sma3	AT1G54270; AT3G13920; AT4G00660; AT5G11200; At1g54270; At1g72730; At2g45810; At3g13920; At3g19760; At3g61240; At4g00660; At5g11170; At5g11200; CHLREDRAFT_188942; CHLREDRAFT_56005; CHLREDRAFT_608; DEH1; EIF4A; EIF4A3; F20D21.9; F20D21_52; F28P22.8; F2I11_6

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	regulation of translation	GO:0006417	Biological Process	-
Sma3	mRNA transport	GO:0051028	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00660.2	RH8, ATRH8 RNAhelicase-like 8 chr4:274638-277438 FORWARD LENGTH=505	88%
RefSeq	Arabidopsis thaliana	NP_191975.2	DEAD-box ATP-dependent RNA helicase 8 [Arabidopsis thaliana]	88%
RefSeq	Populus trichocarpa	XP_002320116.1	predicted protein [Populus trichocarpa]	90%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKI3

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 80 - 477

Fln protein: HDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTFDDRFNLYRIEQELGTEI

Protein Length: 81

Fln nts: CCATGATTTCCGCAACGGCGTGTGTCGAAACCTCGTGTGCTCTGACCTCCTCACCCGGGGTATTGATATTCAAGCGGTCAATGTTGTCATCAACTTTGATTTTCCCAAAAACTCGGAAACGTATCTTCACCGTATTGGTCGTTCTGGTCGATTCGGGCATCTGGGTCTCGCCATCAACCTGGTGACGTTCGATGATCGCTTTAACCTCTACCGTATCGAACAAGAGCTTGGGACGGAGATTG

Fln Alignment:

GDTE5QK01BWVRQ___HDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINLVTFDDRFNLYRIEQELGTEI
B8LKI3_______________HDFRNGACRNLVCSDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain