SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81171

Length: 142 nt

UniGene Fasta

>sp_v3.0_unigene81171
TTGATTCCATGGCCCGAGATCATTGCATAGAACCAAGCATGGAACACTATGCATGCATGGTTGACCTTTTATGTCGCTCAGGGTCATTGTATGAAGCAGAATATTTTATCAGCAAAATGCCATTTGAACCTGATGCTATTAT

Ace file of the UniGene sp_v3.0_unigene81171

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q5G1T1.1\|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49170, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2261; Flags: Precursor gb\|AAW62962.1\| emb	-	-	6.0e-09	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	Gene names
Sma3	GSVIVT00000138001; GSVIVT00016451001;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49170.1	EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein chr3:18226954-18229600 REVERSE LENGTH=850	5.0e-13	60%
RefSeq	Arabidopsis thaliana	NP_190486.2	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	7.0e-13	60%
RefSeq	Populus trichocarpa	XP_002322762.1	predicted protein [Populus trichocarpa]	1.0e-12	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 46 - 370

Fln protein: DSMARDHCIEPSMEHYACMVDLLCRSGSLYEAEYFISKMPFEPDAI

Protein Length: 47

Fln nts: TTGATTCCATGGCCCGAGATCATTGCATAGAACCAAGCATGGAACACTATGCATGCATGGTTGACCTTTTATGTCGCTCAGGGTCATTGTATGAAGCAGAATATTTTATCAGCAAAATGCCATTTGAACCTGATGCTATTAT

Fln Alignment:

GDTE5QK01DGW3T___DSMARDHCIEPSMEHYACMVDLLCRSGSLYEAEYFISKMPFEPDA
A9P0W0_______________DSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain