SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81117

Length: 108 nt

UniGene Fasta

>sp_v3.0_unigene81117
TTGGTTGGGTCCATCTCCATTCTCCACAACAAACGTCATCTGGAAGTACACACAACGTGGGGACTGAAGATGGCGTTTGTTGTGGAGAATGGAGATGGACCCAACCAA

Ace file of the UniGene sp_v3.0_unigene81117

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUH9_PINTA	-	-	6.0e-06	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	5.449e-06	-

Source	Gene names
Sma3	At2g38080; At5g01190; F16M14.1; F7J8.170; IRX12; LAC10; LAC4; Lac8;

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ43

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 36 - 559

Fln protein: LVGSISILHNKRHLEVHTTWGLKMAFVVENGDGPNQ

Protein Length: 37

Fln nts: TTGGTTGGGTCCATCTCCATTCTCCACAACAAACGTCATCTGGAAGTACACACAACGTGGGGACTGAAGATGGCGTTTGTTGTGGAGAATGGAGATGGACCCAACCAA

Fln Alignment:

GDTE5QK01DESLI___HLEVHTTWGLKMAFVVENGDGPNQ
C0PQ43_______________HLEVHTTWGLKMAFVVENGDGPNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain