SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81064

Length: 255 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene81064
CTCGAGATGTTATCGGTCCGAGACGATGCTGTTACTCTTCGATCTGCCGTCTCCGGGATCCTTCAGAAGCTCAAAAAGGCAGAAGGTTCATCAGCAGAATCTGTAGCAGCACTTGCAAGAGTGGATACAATCAAACAGCGTATGGAAGCTGCATATGAGACCCTGCAGGATGCTGCAGGTTTGACGAAGTTGAGTGCAAGTGTTGAAGACGTATTTGCAAGTGGAGACCTTTCTCAGGCTGCAGAAACCTTAGCT

Ace file of the UniGene sp_v3.0_unigene81064 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	golgi complex component-related protein [Arabidopsis thaliana] dbj\|BAB09754.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96080.1\| golgi complex component-related protein [Arabidopsis thaliana]	-	-	1.0e-28	77%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	82%

Source	Gene names
Sma3	At5g51430; EYE; GSVIVT00029929001; MICPUCDRAFT_30910; Os06g0669600; OsI_24056; OsJ_22310; P0686E06.32; PHYPADRAFT_216575; POPTRDRAFT_554180; RCOM_1500420; VITISV_043812;

Source	GOs	Term	Type	Identity
Sma3	Golgi organization	GO:0007030	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	meristem structural organization	GO:0009933	Biological Process	-
Sma3	shoot morphogenesis	GO:0010016	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	protein retention in Golgi apparatus	GO:0045053	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Conserved oligomeric Golgi complex, subunit 7	IPR019335	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51430.1	EYE conserved oligomeric Golgi complex component-related / COG complex component-related chr5:20887044-20890795 REVERSE LENGTH=836	3.0e-35	77%
RefSeq	Arabidopsis thaliana	NP_199956.1	golgi complex component-related protein [Arabidopsis thaliana]	3.0e-35	77%
RefSeq	Populus trichocarpa	XP_002304412.1	predicted protein [Populus trichocarpa]	4.0e-36	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1LP20

Fln msg: Distance to subject end: 628 aas, your sequence is shorter than subject: 85 - 782

Fln protein: LEMLSVRDDAVTLRSAVSGILQKLKKAEGSSAESVAALARVDTIKQRMEAAYETLQDAAGLTKLSASVEDVFASGDLSQAAETLA

Protein Length: 86

Fln nts: CTCGAGATGTTATCGGTCCGAGACGATGCTGTTACTCTTCGATCTGCCGTCTCCGGGATCCTTCAGAAGCTCAAAAAGGCAGAAGGTTCATCAGCAGAATCTGTAGCAGCACTTGCAAGAGTGGATACAATCAAACAGCGTATGGAAGCTGCATATGAGACCCTGCAGGATGCTGCAGGTTTGACGAAGTTGAGTGCAAGTGTTGAAGACGTATTTGCAAGTGGAGACCTTTCTCAGGCTGCAGAAACCTTAGCT

Fln Alignment:

GDTE5QK01DM1JX___EMLSVRDDAVTLRSAVSGILQKLKKAEGSSAESVAALARVDTIKQRMEAAYETLQDAAGLTKLSASVEDVFASGDLSQAAETLA
I1LP20_______________DVIRLRDDAVSLRSAVSSILQKLKKAEGSSAESIAALAKVDVVKQRMEAAYETLQDAAGLTQLSATVEDVFASGDLPRAAETLA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain