SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81060

Length: 171 nt

UniGene Fasta

>sp_v3.0_unigene81060
GAAGACGCCGCCAGGCCTACGACAGGGCTGCCATAAAGTTTCGAGGCCCCGACGCCATCACCAATTTCAACTTCGCCGACATCCATCCAGAGACGGTGTTTCTGCGCGGGCACTCCAAGTACGAGATTGTTGACATGCTTAGAAAGCACACCTACGACGAAGAATTGGACC

Ace file of the UniGene sp_v3.0_unigene81060

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RAV-like DNA-binding protein [Glycine max]	-	-	1.0e-11	64%
FL-Next	tr=APETALA2-like protein 2; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	48%

Source	Gene names
Sma3	ARF14; At3g25730; K13N2.14; K13N2.7; PHYPADRAFT_127150; PHYPADRAFT_45121; RAV;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G25730.1	EDF3 ethylene response DNA binding factor 3 chr3:9396505-9397506 FORWARD LENGTH=333	1.0e-15	64%
RefSeq	Arabidopsis thaliana	NP_189201.1	AP2/ERF and B3 domain-containing transcription factor ARF14 [Arabidopsis thaliana]	2.0e-15	64%
RefSeq	Populus trichocarpa	XP_002315958.1	AP2 domain-containing transcription factor [Populus trichocarpa]	6.0e-13	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q76H94

Fln msg: Distance to subject end: 370 aas, your sequence is shorter than subject: 56 - 554

Fln protein: RRRQAYDRAAIKFRGPDAITNFNFADIHPETVFLRGHSKYEIVDMLRKHTYDEELD

Protein Length: 57

Fln nts: GAAGACGCCGCCAGGCCTACGACAGGGCTGCCATAAAGTTTCGAGGCCCCGACGCCATCACCAATTTCAACTTCGCCGACATCCATCCAGAGACGGTGTTTCTGCGCGGGCACTCCAAGTACGAGATTGTTGACATGCTTAGAAAGCACACCTACGACGAAGAATTGGACC

Fln Alignment:

GDTE5QK01AX8SU___QAYDRAAIKFRGPDAITNFNFADIHPETVFLRGHSKYEIVDMLRKHT
Q76H94_______________RAYDRAAIKFRGQDADINFNLSDYEDDLKQLNNLTKEEFVHILRRQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain