SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81050

Length: 262 nt

UniGene Fasta

>sp_v3.0_unigene81050
GATGGTACATGAAGAGCTCTTAAAAGATTTTGTCATTTGCAAGCGTGTGCTGCAGATAAGAAGAACAAAGGAATTGAGGGCCTTATCAGGATGGAGGTATTGCTACAGTATATTTTTGGAATTTTCTGATGTCATGGGACCTTTGATTAGAGAATTTTTGACAAGACTTGGCAAAGGTATATCTTTCCTTCTGGTGAGTTTAATTGGCAGATCTCTTGGTCTAATTTATCGAGGTATAAGGCAGTCTATCAGCTGGAAATCA

Ace file of the UniGene sp_v3.0_unigene81050

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3685 domain containing protein	-	-	6.0e-14	44%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	67%

Source	Gene names
Sma3	At5g48830; GSVIVT00033824001; OJ1471_E11.26-1; OSJNBb0071O21.1-1; Os02g0515000; OsI_07398; OsJ_06901; PHYPADRAFT_160063; POPTRDRAFT_851473; RCOM_1721100; VITISV_001049;

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48830.2	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. chr5:19800269-19802625 REVERSE LENGTH=517"	2.0e-20	55%
RefSeq	Arabidopsis thaliana	NP_568703.1	uncharacterized protein [Arabidopsis thaliana]	9.0e-23	56%
RefSeq	Populus trichocarpa	XP_002301777.1	predicted protein, partial [Populus trichocarpa]	1.0e-24	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D8RGK1

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 87 - 441

Fln protein: MVHEELLKDFVICKRVLQIRRTKELRALSGWRYCYSIFLEFSDVMGPLIREFLTRLGKGISFLLVSLIGRSLGLIYRGIRQSISWKS

Protein Length: 88

Fln nts: GATGGTACATGAAGAGCTCTTAAAAGATTTTGTCATTTGCAAGCGTGTGCTGCAGATAAGAAGAACAAAGGAATTGAGGGCCTTATCAGGATGGAGGTATTGCTACAGTATATTTTTGGAATTTTCTGATGTCATGGGACCTTTGATTAGAGAATTTTTGACAAGACTTGGCAAAGGTATATCTTTCCTTCTGGTGAGTTTAATTGGCAGATCTCTTGGTCTAATTTATCGAGGTATAAGGCAGTCTATCAGCTGGAAATCA

Fln Alignment:

GDTE5QK01AZVVD___LQIRRTKELRALSGWRYCYSIFLEFSDVMGPLIREFLTRLGKGISFLLVSLIGRSLGLIYRGIRQSISWKS
D8RGK1_______________VRVRRSKELKALSGWRYYYSLYMEFSDVVGPLLRILVTKLGQGLSFLLVCLIGRSFGLIYQGIRQSVKWSS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain