SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene81035

Length: 152 nt

UniGene Fasta

>sp_v3.0_unigene81035
GGCCAAGCTCCTTGGATCTGAGAAAAGCTGTCACAACCCTGGTAATGGGCACTTTGGCTATGTTGCACCAGAGTATGCAAGTACAGGGATGCTGAATGAGAGAAGTGATGTCTACGGCTTTGGAGTACTTACCACGGAGATTATTTCGGGAA

Ace file of the UniGene sp_v3.0_unigene81035

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AAC78256.1\| putative serine/threonine protein kinase [Arabidopsis thaliana] emb\|CAB80756.1\| putative serine/threonine protein kinase [Arabidopsis thaliana] gb\|AAO42226.1\| putative serine/threonine pr	-	-	4.0e-11	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Putative serine/threonine protein kinase	-	-	4.763e-07	-

Source	Gene names
Sma3	AT4g01330; AT4g02630; AT4g34500; A_IG002N01.22; At1g01540; At4g02630; At4g34500; B0222C05.2; F14J9.10; F22L4.8; GSVIVT00014847001; GSVIVT00019508001; GSVIVT00022528001; GSVIVT00026917001; GSVIVT00036391001; GSVIVT00037724001; LOC_Os03g03410; LOC_Os03g1268

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02630.1	Protein kinase superfamily protein chr4:1151683-1153161 FORWARD LENGTH=492	1.0e-15	76%
RefSeq	Arabidopsis thaliana	NP_192172.1	protein kinase family protein [Arabidopsis thaliana]	1.0e-15	76%
RefSeq	Populus trichocarpa	XP_002327160.1	predicted protein [Populus trichocarpa]	2.0e-15	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 50 - 656

Fln protein: AKLLGSEKSCHNPGNGHFGYVAPEYASTGMLNERSDVYGFGVLTTEIISG

Protein Length: 51

Fln nts: GGCCAAGCTCCTTGGATCTGAGAAAAGCTGTCACAACCCTGGTAATGGGCACTTTGGCTATGTTGCACCAGAGTATGCAAGTACAGGGATGCTGAATGAGAGAAGTGATGTCTACGGCTTTGGAGTACTTACCACGGAGATTATTTCGGGAA

Fln Alignment:

GDTE5QK01B4MHH___GHFGYVAPEYASTGMLNERSDVYGFGVLTTEIISG
C0PRI9_______________GTFGYLAPEYASSGKLTDRSDVFSFGVMLLELITG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain