SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80996

Length: 154 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80996
TGGTGGATAAGAATCTCGGTCCTCTCGTCAAGACTGTCATGACCGAGATTCTTATCCACCACGGATCTCGGTCATGACAGTCTTGACCAGGTGTATTCAGTGTACAAGGTGTGTTAGATTTGCTTCTGAAGTTGCTGGAGTACAGGACAGATAT

Ace file of the UniGene sp_v3.0_unigene80996 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH-ubiquinone oxidoreductase 75 kDa subunit n=1 Tax=Picea sitchensis RepID=B8LMM8_PICSI	-	-	2.0e-09	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	NADH-ubiquinone oxidoreductase 75 kDa subunit	-	-	3.061e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	4.62e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Oxidative phosphorylation	00190		4.62e-08	%
Sma3	Metabolic pathways	01100		4.62e-08	%

Source	Gene names
Sma3	At5g37510; EMB1467; GSVIVT00022315001; LOC_Os03g50540; MICPUN_64564; MPA22.5; OSJNBa0014G15.3; Os03g0713400; OsI_13269; OsI_13270; OsJ_12335; POPTRDRAFT_552885; POPTRDRAFT_714215; RCOM_0458390;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	respiratory chain complex I	GO:0045271	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	iron-sulfur cluster binding	GO:0051536	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	photorespiration	GO:0009853	Biological Process	-
Sma3	ATP synthesis coupled electron transport	GO:0042773	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	IPR000283	-	-
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Molybdopterin oxidoreductase	IPR006656	-	-
Sma3	NADH:ubiquinone oxidoreductase, subunit G	IPR010228	-	-
Sma3	NADH-quinone oxidoreductase, chain G, C-terminal	IPR015405	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G37510.2	-	6.0e-12	92%
RefSeq	Arabidopsis thaliana	NP_568550.1	NADH-ubiquinone oxidoreductase subunit [Arabidopsis thaliana]	7.0e-12	92%
RefSeq	Populus trichocarpa	XP_002305231.1	predicted protein [Populus trichocarpa]	9.0e-12	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMM8

Fln msg: Separated hits, possible frame ERROR between 53 and 71, Distance to subject end: 511 aas, your sequence is shorter than subject: 51 - 750

Fln protein: VDKNLGPLVKTVMTEIxxxxxxxVMTVLTRCIQCTRCVRFASEVAGVQDRY

Protein Length: 52

Fln nts: TGGTGGATAAGAATCTCGGTCCTCTCGTCAAGACTGTCATGACCGAGATTCTxxxxxxxxxxxxxxxxxxGGTCATGACAGTCTTGACCAGGTGTATTCAGTGTACAAGGTGTGTTAGATTTGCTTCTGAAGTTGCTGGAGTACAGGACAGATAT

Fln Alignment:

GDTE5QK01B9Z2Y___VDKNLGPLVKTVMTEILxxxxxxVMTVLTRCIQCTRCVRFASEVAGVQD
B8LMM8_______________VDKNLGPLVKTVMTRCIxxxxxxVKTVMTRCIQCTRCVRFASEVAGVQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain