UniGene Name: sp_v3.0_unigene80971
Length: 180 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
UniGene Fasta (sense) |
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>sp_v3.0_unigene80971
G |
Ace file of the UniGene sp_v3.0_unigene80971 (antisense) |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | transferase, transferring glycosyl groups, putative (EC:2.4.1.12) | - | - | 3.0e-07 | 93% |
FL-Next | sp=Probable xyloglucan glycosyltransferase 7; Oryza sativa subsp. japonica (Rice). | - | - | 0.0 | 77% |
Sma3 | Cellulose synthase-like protein C4 | - | - | 2.319e-08 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Transferases, Glycosyltransferases, Hexosyltransferases. | EC:2.4.1.- | - | 6.77e-24 | - |
Source | Gene names |
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Sma3 | At3g07330; At3g28180; At4g07960; At4g31590; CSLC1; CSLC10; CSLC12; CSLC2; CSLC3; CSLC4; CSLC5; CSLC6; CSLC7; CSLC9; CslC2; CslC3; F1K3.3; F21O3.4; F28M20.220; GSVIVT00008341001; GSVIVT00014999001; GSVIVT00020790001; GSVIVT00025276001; LOC_Os01g56130; LOC_ |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | Golgi membrane | GO:0000139 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | integral to membrane | GO:0016021 | Cellular Component | 0.0 | - |
Sma3 | transferase activity | GO:0016740 | Molecular Function | 0.0 | - |
Sma3 | transferase activity, transferring glycosyl groups | GO:0016757 | Molecular Function | 0.0 | - |
Sma3 | cellular cell wall organization | GO:0007047 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Glycosyl transferase, family 2 | IPR001173 | - | 0.0 | - |
Sma3 | Inorganic pyrophosphatase | IPR008162 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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RefSeq | Populus trichocarpa | XP_002307301.1 | predicted protein [Populus trichocarpa] | 7.0e-11 | 93% |
Full-Lengther Next Prediction |
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Fln status: C-terminus
Fln database: sp_plants
Fln subject: Q6L538
Fln msg: your sequence is shorter than subject: 46 - 688
Fln protein:
E
Protein Length:
47
Fln nts:
G
Fln Alignment:
GDTE5QK01AKW2O___IL*TIARSLLSAQGLHFYFLLFQGISFLLVGHDLI
Q6L538_______________LLTAAARSLLSAQGIHFYFLLFQGVSFLVVGLDLI
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain