SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80939

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene80939
TTCAGAGGATAGGCACTGGCATGTTCATCTCCACTCTGTCAATGATTGTTGCTGCGTTAACAGAGACAAGAAGAATCAAGGCAGCAAAGGATAATGGACTCGTAGATATTCCCAATGCAACAATTCCATTGAGCATTTCTTTGCTGCTTCCACAATATGTGTTATTTGGCATAGCTGATG

Ace file of the UniGene sp_v3.0_unigene80939

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peptide transporter like protein [Arabidopsis thaliana]	-	-	1.0e-14	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	9.435e-15	-

Source	Gene names
Sma3	At1g22540; F12K8.12; GSVIVT00001821001; GSVIVT00001823001; GSVIVT00001825001; GSVIVT00001829001; GSVIVT00001840001; GSVIVT00001844001; GSVIVT00030928001; PHYPADRAFT_189464; POPTRDRAFT_1110854; POPTRDRAFT_913043; POPTRDRAFT_914816; POPTRDRAFT_918829; RCOM_

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72140.1	Major facilitator superfamily protein chr1:27141877-27144346 FORWARD LENGTH=555	1.0e-19	57%
RefSeq	Arabidopsis thaliana	NP_177359.1	putative peptide/nitrate transporter [Arabidopsis thaliana]	1.0e-19	57%
RefSeq	Populus trichocarpa	XP_002327274.1	predicted protein [Populus trichocarpa]	3.0e-20	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW85

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 59 - 574

Fln protein: QRIGTGMFISTLSMIVAALTETRRIKAAKDNGLVDIPNATIPLSISLLLPQYVLFGIAD

Protein Length: 60

Fln nts: TTCAGAGGATAGGCACTGGCATGTTCATCTCCACTCTGTCAATGATTGTTGCTGCGTTAACAGAGACAAGAAGAATCAAGGCAGCAAAGGATAATGGACTCGTAGATATTCCCAATGCAACAATTCCATTGAGCATTTCTTTGCTGCTTCCACAATATGTGTTATTTGGCATAGCTGATG

Fln Alignment:

GDTE5QK01EGOKC___QRIGTGMFISTLSMIVAALTETRRIKAAKDNGLVDIPNATIPLSISLLLPQYVLFGIAD
A9NW85_______________QRIGTGMFISILSMIVAALAEIRRIKAAKDNGLIDMPEATIPLSISLLLPQYILFGIAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain