SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80833

Length: 150 nt

UniGene Fasta

>sp_v3.0_unigene80833
GTTATGACACCTATACTCCAGACATCACATATATTTTGCTGTGTGGGAAGCGTCCATTTTGGGACAAGACAGAGGATGGAATCTTTAAAGAGGTGCTAAAGAGAATCTCGATTTCCATGAAAAGCCATGGTTATGTGTTAGTGCTAGTGC

Ace file of the UniGene sp_v3.0_unigene80833

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calcium-dependent protein kinase 16 [Arabidopsis thaliana] sp\|Q7XJR9.1\|CDPKG_ARATH RecName: Full=Calcium-dependent protein kinase 16 gb\|AEC06699.1\| calcium-dependent protein kinase 16 [Arabidopsis thaliana]	-	-	2.0e-07	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Calcium-dependent protein kinase	-	-	6.307e-11	-

Source	Gene names
Sma3	AT5G66210; At2g17890; At5g66210; CDPK1; CDPK5; CPK16; CPK18; CPK28; CPK5; CPK6; GSVIVT00036780001; K2A18.29; Os02g0126400; Os07g0409900; OsI_05678; OsI_25726; OsJ_05211; OsJ_23937; P0482F12.15-1; P0482F12.15-2; PHYPADRAFT_130600; PHYPADRAFT_185437; PHYPAD

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G17890.1	CPK16 calcium-dependent protein kinase 16 chr2:7769885-7772627 REVERSE LENGTH=571	5.0e-11	92%
RefSeq	Arabidopsis thaliana	NP_179379.1	calcium-dependent protein kinase 16 [Arabidopsis thaliana]	6.0e-11	92%
RefSeq	Populus trichocarpa	XP_002327754.1	calcium dependent protein kinase 18 [Populus trichocarpa]	2.0e-11	96%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWM8

Fln msg: Distance to subject end: 216 aas, your sequence is shorter than subject: 49 - 589

Fln protein: YDTYTPDITYILLCGKRPFWDKTEDGIFKEVLKRISISMKSHGYVLVLV

Protein Length: 50

Fln nts: GTTATGACACCTATACTCCAGACATCACATATATTTTGCTGTGTGGGAAGCGTCCATTTTGGGACAAGACAGAGGATGGAATCTTTAAAGAGGTGCTAAAGAGAATCTCGATTTCCATGAAAAGCCATGGTTATGTGTTAGTGCTAGTGC

Fln Alignment:

GDTE5QK01EAP0N___ITYILLCGKRPFWDKTEDGIFKEVLK
A9NWM8_______________ITYILLCGSRPFWARTESGIFRAVLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain