SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80825

Length: 227 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80825
GCTGCCAAGGCAGTGAAGTTAAGATGTGGACTTTGCAGCGCACNGTTCTCTGCATCCAATCCATCAAGAACAGCATCTGAGCATCTCAAACGAGGCACCTGCCCCAATTTTAACGGAGCAATACCCAGGCCCATATCGTCGATTCCCTCATCGAAACCCGCCAGCACCAGTTCTTCATCCCAGCAGCAGCAGCAGCAGCAGAGGAAGAGAAGCCTTGCACAGGCAGC

Ace file of the UniGene sp_v3.0_unigene80825 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	91%

Source	Gene names
Sma3	At1g62870; F16P17.2; GSVIVT00010314001; GSVIVT00038466001; OSJNBa0055I13.10; Os02g0450000; OsI_07065; OsJ_06582; PHYPADRAFT_134347; PHYPADRAFT_187430; PHYPADRAFT_194920; PHYPADRAFT_55862; POPTRDRAFT_413921; POPTRDRAFT_570574; POPTRDRAFT_575696; POPTRDRAFT

Source	InterPros	Term	Type	e value	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62870.1	" unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12380.1); Has 351 Blast hits to 343 proteins in 42 species: Archae - 2; Bacteria - 0; Metazoa - 27; Fungi - 5; Plants - 299; Viruses - 0; Other Eukaryotes - 18 (sou	5.0e-16	91%
RefSeq	Arabidopsis thaliana	NP_176475.2	uncharacterized protein [Arabidopsis thaliana]	6.0e-16	91%
RefSeq	Populus trichocarpa	XP_002304439.1	predicted protein, partial [Populus trichocarpa]	5.0e-16	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RG28

Fln msg: Distance to subject end: 623 aas, your sequence is shorter than subject: 75 - 737

Fln protein: AAKAVKLRCGLCSALFSASNPSRTASEHLKRGTCPNFNGAIPRPISSIPSSKPASTSSSSQQQQQQQRKRSLAQA

Protein Length: 76

Fln nts: GCTGCCAAGGCAGTGAAGTTAAGATGTGGACTTTGCAGCGCACtGTTCTCTGCATCCAATCCATCAAGAACAGCATCTGAGCATCTCAAACGAGGCACCTGCCCCAATTTTAACGGAGCAATACCCAGGCCCATATCGTCGATTCCCTCATCGAAACCCGCCAGCACCAGTTCTTCATCCCAGCAGCAGCAGCAGCAGCAGAGGAAGAGAAGCCTTGCACAGGCAGC

Fln Alignment:

GDTE5QK01EBIHO___KAVKLRCGLCSALFSASNPSRTASEHLKRGTCPNFNG
D8RG28_______________KAVKLRCGLCNAMFSASNPSRTASEHLKRGTCPNFSG

SSRs (tot: 1)

Start position	End position	Sequence	Length
27	47	CTG CTG CTG CTG CTG CTG CTG	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain