SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80795

Length: 97 nt

UniGene Fasta

>sp_v3.0_unigene80795
TATATCTTTGTCTAAGAATGATTCCTATGTGATGTCTGCTTCCGGTGGCAAGGTCTCCTTATTCAATATGATGACATTTAAGTTATGTCTCTGGTGC

Ace file of the UniGene sp_v3.0_unigene80795

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	89%
Sma3	WD-40 repeat protein-like	-	-	7.516e-07	-

Source	Gene names
Sma3	At5g27030; F15P11.3; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; MtrDRAFT_AC147963g18v2; Os01g0254100; Os08g0162100; OsI_01216; OsI_27917; OsJ_01134; OsJ_26138; P0577B11.132; P0705D01.10-1; PHYPADRAFT_150439; PHYPADRAFT_234967; POPTRDRAFT_111

Source	GOs	Term	Type	e value	Identity
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84JM4

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 32 - 1108

Fln protein: ISLSKNDSYVMSASGGKVSLFNMMTFKLCLWC

Protein Length: 33

Fln nts: TATATCTTTGTCTAAGAATGATTCCTATGTGATGTCTGCTTCCGGTGGCAAGGTCTCCTTATTCAATATGATGACATTTAAGTTATGTCTCTGGTGC

Fln Alignment:

GDTE5QK01BHLK2___ISLSKNDSYVMSASGGKVSLFNMMTFKL
Q84JM4_______________IALSKNDSYVMSAAGGKVSLFNMMTFKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain