SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80784

Length: 282 nt

UniGene Fasta

>sp_v3.0_unigene80784
CTTGACTCATCCTTAGTTGCGGCTGTTGCGGCTCGCCATTTGGCTGCTACCAACGCTGCAAAACAGTGGGGCGACAAACTGCACTCTTTCTGTGTTGGATTACAGGGTTCTCCAGATTTGAAGGCTGCAAAAGAGGTAGCAGAGTACCTTGGTACTGTTCATCACGAATTCCATTTCACTGTGCAGGATGGTATAGATGCAATCGAGGACGTTATATACCATGTCGAAACATATGACGTGACAACTATCAGAGCGAGCACGCCCATGTTTTTAATGTCTCGG

Ace file of the UniGene sp_v3.0_unigene80784

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Asparagine synthetase n=3 Tax=Pinaceae RepID=E7EAQ2_PINPS	-	-	2.0e-37	82%
FL-Next	sp=Asparagine synthetase; Pinus sylvestris (Scots pine).	-	-	0.0	94%
Sma3	Asparagine synthetase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Asparagine synthase (glutamine-hydrolyzing).	EC:6.3.5.4	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Nitrogen metabolism	00910	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	117M18_15; AND1; ANS1; AS; AS1; AS2; AS3; ASN1; ASN2; ASN3; As1; As2; AsAS1; AsAS2; Asn1; AsnS1; AsnS2; AsnS3; AsnS4; At3g47340; At5g10240; At5g65010; CHLREDRAFT_109602; CHLREDRAFT_140252; F18D22_10; GSVIVT00012864001; GSVIVT00024074001; HAS1; HAS1.1; HAS

Source	GOs	Term	Type	Identity
Sma3	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	-
Sma3	asparagine biosynthetic process	GO:0006529	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	cellular amino acid catabolic process	GO:0009063	Biological Process	-
Sma3	response to absence of light	GO:0009646	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to glucose stimulus	GO:0009749	Biological Process	-
Sma3	response to fructose stimulus	GO:0009750	Biological Process	-
Sma3	cellular response to sucrose starvation	GO:0043617	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Asparagine synthase, glutamine-hydrolyzing	IPR006426	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47340.1	ASN1, DIN6, AT-ASN1 glutamine-dependent asparagine synthase 1 chr3:17438136-17441043 REVERSE LENGTH=584	9.80909e-45	89%
RefSeq	Arabidopsis thaliana	NP_850664.1	asparagine synthetase [glutamine-hydrolyzing] [Arabidopsis thaliana]	5.60519e-45	89%
RefSeq	Populus trichocarpa	XP_002299991.1	predicted protein [Populus trichocarpa]	3.00018e-42	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q6HA26

Fln msg: Distance to subject end: 263 aas, your sequence is shorter than subject: 94 - 593

Fln protein: LDSSLVAAVAARHLAATNAAKQWGDKLHSFCVGLQGSPDLKAAKEVAEYLGTVHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSR

Protein Length: 95

Fln nts: CTTGACTCATCCTTAGTTGCGGCTGTTGCGGCTCGCCATTTGGCTGCTACCAACGCTGCAAAACAGTGGGGCGACAAACTGCACTCTTTCTGTGTTGGATTACAGGGTTCTCCAGATTTGAAGGCTGCAAAAGAGGTAGCAGAGTACCTTGGTACTGTTCATCACGAATTCCATTTCACTGTGCAGGATGGTATAGATGCAATCGAGGACGTTATATACCATGTCGAAACATATGACGTGACAACTATCAGAGCGAGCACGCCCATGTTTTTAATGTCTCGG

Fln Alignment:

GDTE5QK01BPZBV___LDSSLVXXXXXXXXXXXXXXKQWGDKLHSFCVGLQGSPDLKAAKEVAEYLGTVHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSR
Q6HA26_______________LDSSLVAAVASRYLAATKAGKQWGDKLHSFCVGLKGSPDLKAAKEVAEYLGTVHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSR

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain