SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80781

Length: 405 nt

UniGene Fasta

>sp_v3.0_unigene80781
AGGAGCACGTGACGGAGGTGCTGAACGAGGAGCTGTCGCGCATCTCCAACAAGGTGCGCTTCATCACCGAGGTCATCAACGGCACGCTGGTGGTCAGCAACAAGAAGAAAGCCGTGCTGCTGGCCGAGCTCGCCGCGAAGAAGTACACTCCCTACCCCAAGAAGGCTAGCGAGACTAGCGAGGACGCGGATGAGGAGGAGCGCTCGCAGGCATCCTCCGCCTACGACTACCTGCTGTCGCTGCCGCTGTGGACTCTGACCGCCGAGCGCGTGGAGGCCCTCAAGCGCCAGTGCGCCGAGAAGGAGGCGGAGCTCAAGGTCCACCTCGCCACCACGGTCGAGGCGATGTGGGTGCGTGACCTGGATGAGTTCCTCGAGGTGCTCGACAAGCAGGAGGAGGCCGAGC

Ace file of the UniGene sp_v3.0_unigene80781

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA topoisomerase 2 n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR	-	-	3.0e-12	32%
FL-Next	sp=DNA topoisomerase 2; Pisum sativum (Garden pea).	-	-	0.0	46%

Source	Gene names
Sma3	THAPSDRAFT_36420;

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA	IPR001241	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA topoisomerase, type IIA, subunit B, domain 2	IPR013506	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-
Sma3	DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta	IPR013759	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O24308

Fln msg: Distance to subject end: 317 aas, your sequence is shorter than subject: 134 - 1462

Fln protein: EHVTEVLNEELSRISNKVRFITEVINGTLVVSNKKKAVLLAELAAKKYTPYPKKASETSEDADEEERSQASSAYDYLLSLPLWTLTAERVEALKRQCAEKEAELKVHLATTVEAMWVRDLDEFLEVLDKQEEAE

Protein Length: 135

Fln nts: AGGAGCACGTGACGGAGGTGCTGAACGAGGAGCTGTCGCGCATCTCCAACAAGGTGCGCTTCATCACCGAGGTCATCAACGGCACGCTGGTGGTCAGCAACAAGAAGAAAGCCGTGCTGCTGGCCGAGCTCGCCGCGAAGAAGTACACTCCCTACCCCAAGAAGGCTAGCGAGACTAGCGAGGACGCGGATGAGGAGGAGCGCTCGCAGGCATCCTCCGCCTACGACTACCTGCTGTCGCTGCCGCTGTGGACTCTGACCGCCGAGCGCGTGGAGGCCCTCAAGCGCCAGTGCGCCGAGAAGGAGGCGGAGCTCAAGGTCCACCTCGCCACCACGGTCGAGGCGATGTGGGTGCGTGACCTGGATGAGTTCCTCGAGGTGCTCGACAAGCAGGAGGAGGCCGAGC

Fln Alignment:

GDTE5QK01BQF0A___YDYLLSLPLWTLTAERVEALKRQCAEKEAELKVHLATTVEAMWVRDLDEFLEVLDK
O24308_______________YDDLLSLPIGTLTLESVQKLLDEKTEKEKEYEILSGTPTTSLWLKDLDEFEKKLDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain