SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80741

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene80741
AGTTCATTATACTCTGCAGATTGATAATTCTATCAAGCTTGTTGGAGCTGGAGCTTTTGCATTTCATCCAACTTTGGAGTGGGTTTTCATTGGTGATAGACGTGGAACTCTTCTTGCATGGGACGTATCAGTGCAGGCAAGACCTAATATGATTGGAATTACCCATGTTAGCTCAAGTCCAATTGTTGCAGTTGCTTGGCATTCTTTGAGGCAATTTCTATTACACTCTCTAAAGATGGCTCTTTACA

Ace file of the UniGene sp_v3.0_unigene80741

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	72%

Source	Gene names
Sma3	GSVIVT00004635001; OsI_31321; OsJ_29312; PHYPADRAFT_124044; PHYPADRAFT_71167; RCOM_0601590; T20E23_190;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G50590.1	Transducin/WD40 repeat-like superfamily protein chr3:18771292-18779220 FORWARD LENGTH=1614	1.0e-29	67%
RefSeq	Arabidopsis thaliana	NP_190628.6	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	1.0e-29	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HJH4

Fln msg: Distance to subject end: 449 aas, your sequence is shorter than subject: 82 - 664

Fln protein: VHYTLQIDNSIKLVGAGAFAFHPTLEWVFIGDRRGTLLAWDVSVQARPNMIGITHVSSSPIVAVAWHSLRQFLLHSLKMALY

Protein Length: 83

Fln nts: AGTTCATTATACTCTGCAGATTGATAATTCTATCAAGCTTGTTGGAGCTGGAGCTTTTGCATTTCATCCAACTTTGGAGTGGGTTTTCATTGGTGATAGACGTGGAACTCTTCTTGCATGGGACGTATCAGTGCAGGCAAGACCTAATATGATTGGAATTACCCATGTTAGCTCAAGTCCAATTGTTGCAGTTGCTTGGCATTCTTTGAGGCAATTTCTATTACACTCTCTAAAGATGGCTCTTTACA

Fln Alignment:

GDTE5QK01CJIZK___VHYTLQIDNSIKLVGAGAFAFHPTLEWVFIGDRRGTLLAWDVSVQARPNMIGITHVSSSPIVAVAWHSLRQFLL
F6HJH4_______________VHYTLQLDNTIKLIGAGAFAFHPTLEWIFVGDRRGTLLAWDVSTE-RPNMIGITQVGSQPITSVAWLPVLRLLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain