SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80704

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene80704
TGATCAGGCTCCTCCTCTGACTGAGGGGGGTAGATGTGAAGAGGGGAAGAAGCCGGGACTGGTAGATAAAATCAAAGAGAAGCGAGAGGAGATGTCCAACGTTCTCAGAAAGATGAGGGCTGCTGGTACCACTGAGAAGAAGAAGTAATATTTCTAGCATTGTTGTTGGGCAGTTTTTACATCTGGTATTTGATCAGGGCTGCTGGTACCACTGAGAAGAAGAAGTAATATTTCTAGCATTGTTAC

Ace file of the UniGene sp_v3.0_unigene80704

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dehydrin 7 (Fragment) n=4 Tax=Pinus pinaster RepID=B8XQ35_PINPS	-	-	4.0e-08	100%
FL-Next	sp=60S ribosomal protein L36; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Dehydrin 7	-	-	6.035e-09	-

Source	Gene names
Sma3	dhn7; dhn8;

Source	GOs	Term	Type	e value	Identity
Sma3	response to stress	GO:0006950	Biological Process	0.0	-
Sma3	response to water	GO:0009415	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Dehydrin	IPR000167	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL37

Fln msg: your sequence is shorter than subject: 49 - 110

Fln protein: DQAPPLTEGGRCEEGKKPGLVDKIKEKREEMSNVLRKMRAAGTTEKKK*

Protein Length: 50

Fln nts: TGATCAGGCTCCTCCTCTGACTGAGGGGGGTAGATGTGAAGAGGGGAAGAAGCCGGGACTGGTAGATAAAATCAAAGAGAAGCGAGAGGAGATGTCCAACGTTCTCAGAAAGATGAGGGCTGCTGGTACCACTGAGAAGAAGAAGTAA___TATTTCTAGCATTGTTGTTGGGCAGTTTTTACATCTGGTATTTGATCAGGGCTGCTGGTACCACTGAGAAGAAGAAGTAATATTTCTAGCATTGTTAC

Fln Alignment:

GDTE5QK01C1VDQ___KKPGLVDKIKEKREEMSNVLRKMRAAGTTEKKK
A9NL37_______________KKLGTHKRAKKKREEMSNVLRKMRAAGTTEKKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain