SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80695

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene80695
CTCAGGTGATCAAGGCTTATAATGTGCTTCTTAAGCCTCTATCCCGAGCACGATATCTGTTACACCTGCAAGGCATCCATGTTGATGAGGAAGCAACTGTGACTGATCCAGAATTGCTCATGGAGATCATGGAGGTTCGCCAATCTGTAGAAGATGCTAACAATGATGATGCTCTCAAAATTCTTCAGAGTAAACACAAGCGAAACTTGAAGAATGCCGGACATCTTTCTCAACTGCATACG

Ace file of the UniGene sp_v3.0_unigene80695

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	molecular chaperone HscB [Arabidopsis thaliana] gb\|AAM91610.1\| putative protein [Arabidopsis thaliana] gb\|AAN15384.1\| putative protein [Arabidopsis thaliana] gb\|AED91011.1\| molecular chaperone HscB [Arabidopsis thaliana]	-	-	6.0e-10	44%
FL-Next	tr=Co-chaperone Hsc20 family protein, expressed; Oryza sativa subsp. japonica (Rice).	-	-	0.0	57%
Sma3	Os12g0456200 protein	-	-	5.848e-06	-

Source	Gene names
Sma3	LOC_Os12g27070; Os12g0456200; OsI_38245; OsJ_36006;

Source	GOs	Term	Type	Identity
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	chaperone binding	GO:0051087	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Co-chaperone Hsc20	IPR004640	-	-
Sma3	Heat shock cognate protein B, C-terminal oligomerisation	IPR009073	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002333468.1	predicted protein, partial [Populus trichocarpa]	4.0e-17	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2QRM4

Fln msg: Distance to subject end: 29 aas, your sequence is shorter than subject: 80 - 260

Fln protein: QVIKAYNVLLKPLSRARYLLHLQGIHVDEEATVTDPELLMEIMEVRQSVEDANNDDALKILQSKHKRNLKNAGHLSQLHT

Protein Length: 81

Fln nts: CTCAGGTGATCAAGGCTTATAATGTGCTTCTTAAGCCTCTATCCCGAGCACGATATCTGTTACACCTGCAAGGCATCCATGTTGATGAGGAAGCAACTGTGACTGATCCAGAATTGCTCATGGAGATCATGGAGGTTCGCCAATCTGTAGAAGATGCTAACAATGATGATGCTCTCAAAATTCTTCAGAGTAAACACAAGCGAAACTTGAAGAATGCCGGACATCTTTCTCAACTGCATACG

Fln Alignment:

GDTE5QK01AKD4N___VIKAYNVLLKPLSRARYLLHLQGIHVDEEATVTDPELLMEIMEVRQSVEDANNDDALKILQSKHKRNLKNAGHLSQ
Q2QRM4_______________VIDAYRTLSKPLSRALYLLQLEGIPIDEEKTITDPELLMEMMEIREAVNDANDSQTLEKIQSQIKRKLETWSHSFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain