SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80664

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene80664
GGACCTGGAAACTTTTCAATGTATCCAAACCTTGAGAAATCACACATCAGTTGTAATGTCTCTTCTTTGTTGGGACCAATTTCTCTTGTCGTGCTCTTTAGATGGCACAGTGAAGGTTTGGGCTGCCACATCAACTATAGCTCTTGAAGAGATTTACACTCGTATTGAAGAACATGTTTCATGAACAAGGTAGAGTATTCTCAAGAAATGAAGTGCGAGCACTTCAGATTGGACCGGGT

Ace file of the UniGene sp_v3.0_unigene80664

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ	-	-	8.0e-21	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Chromosome undetermined scaffold_139, whole genome shotgun sequence	-	-	2.159e-13	-

Source	Gene names
Sma3	At4g25440; At5g51980; GSVIVT00001478001; GSVIVT00001683001; GSVIVT00003091001; GSVIVT00003098001; GSVIVT00003102001; GSVIVT00003105001; GSVIVT00003115001; GSVIVT00007421001; GSVIVT00025117001; MSG15.6; Os01g0187500; OsI_00706; OsI_08459; OsJ_00683; OsJ_07

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51980.2	Transducin/WD40 repeat-like superfamily protein chr5:21113650-21115902 REVERSE LENGTH=443	1.0e-21	68%
RefSeq	Arabidopsis thaliana	NP_001032059.1	zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana]	2.0e-21	68%
RefSeq	Populus trichocarpa	XP_002321881.1	predicted protein, partial [Populus trichocarpa]	3.0e-23	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPG9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 36 aas, your sequence is shorter than subject: 61 - 370

Fln protein: DLETFQCIQTLRNHTSVVMSLLCWDQFLLSCSLDGTVKVWAATSTIALEEIYTRIEEHVS*

Protein Length: 62

Fln nts: GGACCTGGAAACTTTTCAATGTATCCAAACCTTGAGAAATCACACATCAGTTGTAATGTCTCTTCTTTGTTGGGACCAATTTCTCTTGTCGTGCTCTTTAGATGGCACAGTGAAGGTTTGGGCTGCCACATCAACTATAGCTCTTGAAGAGATTTACACTCGTATTGAAGAACATGTTTCATGAACAAGGTAGAGTATTCTCAAGAAATGAAGTGCGAGCACTTCAGATTGGACCGGGT

Fln Alignment:

GDTE5QK01D6MJ8___DLETFQCIQTLRNHTSVVMSLLCWDQFLLSCSLDGTVKVWAATSTIALEEIYTRIEEH
B8LPG9_______________DLETFQCIQTLRDHTSVVMSLLLWDQFLLSCSLDNTVKVWAATSSGALEVTYTHNEQH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain