SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80610

Length: 273 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80610
GTAGAAGATATTTAAAAGAATCTCTGCAAAACATTCCGATATCAAGTATTTCACGAGAGATAGAATAAGTTATTGAATATGGTTGGCACACAAATCTCCCACGATTGGAAGCACGGAATTACATCGACGTCTTTGGACAGGACGAAAAGATGCCATTTCTGAACGCCGACAAACTTTTAGAACTTGCAAAATTGGACTTCAATATATTTCAATCCATACAACAAAGGGAGTTGAAAGATATATCCAGGTTATATGAATTTTGTTATTGTATTA

Ace file of the UniGene sp_v3.0_unigene80610 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-terpineol synthase n=1 Tax=Pinus taeda RepID=Q84KL4_PINTA	-	-	3.0e-17	59%
FL-Next	sp=Limonene/alpha-pinene synthase, chloroplastic; Abies grandis (Grand fir).	-	-	0.0	68%
Sma3	(4S)-limonene synthase	-	-	4.984e-08	-

Source	Gene names
Sma3	AG2.2; AG3.18; AG6.5; JF67; TPS-Far; TPS-Lim; TPS-Lin; TPS-Myr; TPS-Pin; TPS1; TPS2; ag10; ag11; ag2; ag3; ag6; ag8; ag9; agc11; agc8; agc9;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	lyase activity	GO:0016829	Molecular Function	-
Sma3	carbon-oxygen lyase activity, acting on phosphates	GO:0016838	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	(E)-beta-ocimene synthase activity	GO:0034768	Molecular Function	-
Sma3	pinene synthase activity	GO:0050550	Molecular Function	-
Sma3	myrcene synthase activity	GO:0050551	Molecular Function	-
Sma3	(4S)-limonene synthase activity	GO:0050552	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Terpene synthase-like	IPR001906	-	-
Sma3	Terpene synthase, metal-binding domain	IPR005630	-	-
Sma3	Terpenoid synthase	IPR008949	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M7C9

Fln msg: Distance to subject end: 292 aas, your sequence is shorter than subject: 90 - 637

Fln protein: RRYLKESLQNIPISSISREIE*VIEYGWHTNLPRLEARNYIDVFGQDEKMPFLNADKLLELAKLDFNIFQSIQQRELKDISRLYEFCYCI

Protein Length: 91

Fln nts: GTAGAAGATATTTAAAAGAATCTCTGCAAAACATTCCGATATCAAGTATTTCACGAGAGATAGAATAAGTTATTGAATATGGTTGGCACACAAATCTCCCACGATTGGAAGCACGGAATTACATCGACGTCTTTGGACAGGACGAAAAGATGCCATTTCTGAACGCCGACAAACTTTTAGAACTTGCAAAATTGGACTTCAATATATTTCAATCCATACAACAAAGGGAGTTGAAAGATATATCCAGGTTATATGAATTTTGTTATTGTATTA

Fln Alignment:

GDTE5QK01EIVTR___YLKESLQNXXXXXXXXXXXXXXEYGWHTNLPRLEARNYIDVFGQD-----EKMPFLNADKLLELAKLDFNIFQSIQQRELKDISRLYE
Q9M7C9_______________YLKEVLQKIPVSSFSREIEYVLEYGWHTNLPRLEARNYIDVYGQDSYESSNEMPYVNTQKLLKLAKLEFNIFHSLQQKELQYISRWWK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain