SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80609

Length: 275 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80609
GACACATCTTCGATCACAGTGGAATGGGCAATGGCGGAGCTAATACGCCATCCAAAGATGATGAGGAGATGCCAGGAAGAATTAGACTCCGGGGTGAAAGGGGAGACGTTACGGCTGCACCCCTCTGCTCCTCTGCTGGTGCCTAGAATGGCAACGGAGGCCTGCGAGATAGAGGGATATTACATCCCCAAAAACTGTCGTCTCCTCGTGAACGCCTGGGGCATGCAGCGCGACCCGGAGGTGTGGGAGAGACCACTGGAGTTCGACCCCGACAG

Ace file of the UniGene sp_v3.0_unigene80609 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavonoid-3'-hydroxylase n=12 Tax=Vitis RepID=Q2UYU6_VITVI	-	-	1.0e-27	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Sma3	Flavonoid 3'-hydroxylase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonoid 3'-monooxygenase.	EC:1.14.13.21	-	1.647e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	1.647e-08	%
Sma3	Flavone and flavonol biosynthesis	00944	1.647e-08	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.647e-08	%
Sma3	Metabolic pathways	01100	1.647e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.647e-08	%

Source	Gene names
Sma3	CYP75; CYP75A7; CYP75B2; F3'H; F3'H1; F3'H2; F3'H3; F3H1; F3`H1; F3`H2; Fuchsia; GSVIVT00016215001; GSVIVT00016217001; GSVIVT00038441001; GSVIVT00038443001; GSVIVT00038447001; GtF3'H; HT1; LOC_Os10g16974; LeF3'H; Magenta; NtF3'H; OSJNBb0079E01.10; Os10g03

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	flavonoid 3'-monooxygenase activity	GO:0016711	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	flavonoid 3',5'-hydroxylase activity	GO:0033772	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45550.1	CYP76C4 cytochrome P450, family 76, subfamily C, polypeptide 4 chr2:18773541-18775654 REVERSE LENGTH=511	7.0e-27	46%
RefSeq	Arabidopsis thaliana	NP_182079.1	cytochrome P450 76C4 [Arabidopsis thaliana]	9.0e-27	46%
RefSeq	Populus trichocarpa	XP_002319761.1	flavonoid 3'-hydroxylase [Populus trichocarpa]	1.0e-30	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LME1

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 91 - 516

Fln protein: DTSSITVEWAMAELIRHPKMMRRCQEELDSGVKGETLRLHPSAPLLVPRMATEACEIEGYYIPKNCRLLVNAWGMQRDPEVWERPLEFDPD

Protein Length: 92

Fln nts: GACACATCTTCGATCACAGTGGAATGGGCAATGGCGGAGCTAATACGCCATCCAAAGATGATGAGGAGATGCCAGGAAGAATTAGACTCCGGGGTGAAAGGGGAGACGTTACGGCTGCACCCCTCTGCTCCTCTGCTGGTGCCTAGAATGGCAACGGAGGCCTGCGAGATAGAGGGATATTACATCCCCAAAAACTGTCGTCTCCTCGTGAACGCCTGGGGCATGCAGCGCGACCCGGAGGTGTGGGAGAGACCACTGGAGTTCGACCCCGACAG

Fln Alignment:

GDTE5QK01DBCDG___DTSSITVEWAMAELIRHPKMMRRCQEELDSG---------------------VKGETLRLHPSAPLLVPRMATEACEIEGYYIPKNCRLLVNAWGMQRDPEVWERPLEFDPD
B8LME1_______________DTSASTVEWAMSELIRHPKMMKKCQQEVESAIGQDRRRLKESDIQKLPYLQAVVKETFRLHPSTPLLLPRLAGEACEVEGYYIPKNARLLVNTWGIQRDPDVWERPLEFDPD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain